Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Fungal Soil Community Targeted loci

PROVIDER: PRJNA349439 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5000070.fastq.gz	Fastqsanger.gz
	SRR5000080.fastq.gz	Fastqsanger.gz
	SRR5000090.fastq.gz	Fastqsanger.gz
	SRR5000100.fastq.gz	Fastqsanger.gz
	SRR5000110.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 72

Similar Datasets

uncultured microorganism

Project description:Soil fungal and bacterial community Targeted loci

| PRJNA329556 | ENA

insect metagenome

Project description:Fungal community Targeted Locus (Loci)

| PRJNA218811 | ENA

soil metagenome

Project description:Pioneer fungal community Targeted Locus (Loci)

| PRJNA214124 | ENA

soil fungal community Douglas-fir forest harvest

Project description:soil fungal community Douglas-fir forest harvest Targeted loci environmental

| PRJNA534169 | ENA

Human lung metagenome

Project description:Human lung fungal community Targeted loci environmental

| PRJNA922524 | ENA

Functional gene abundance of tundra soil microbial communities sampled at the EML Thaw Gradient site, AK in May 2004

Project description:Permafrost soil in high latitude tundra is one of the largest terrestrial carbon (C) stocks and is highly sensitive to climate warming. Understanding microbial responses to warming induced environmental changes is critical to evaluating their influence on soil biogeochemical cycles. In this study, a functional gene array (i.e. GeoChip 4.2) was used to analyze the functional capacities of soil microbial communities collected from a naturally degrading permafrost region in Central Alaska. Varied thaw history was reported to be the main driver of soil and plant differences across a gradient of minimally, moderately and extensively thawed sites. Compared with the minimally thawed site, the number of detected functional gene probes across the 15-65 cm depth profile at the moderately and extensively thawed sites decreased by 25 % and 5 %, while the community functional gene beta-diversity increased by 34% and 45%, respectively, revealing decreased functional gene richness but increased community heterogeneity along the thaw progression. Particularly, the moderately thawed site contained microbial communities with the highest abundances of many genes involved in prokaryotic C degradation, ammonification, and nitrification processes, but lower abundances of fungal C decomposition and anaerobic-related genes. Significant correlations were observed between functional gene abundance and vascular plant primary productivity, suggesting that plant growth and species composition could be co-evolving traits together with microbial community composition. Altogether, this study reveals the complex responses of microbial functional potentials to thaw related soil and plant changes, and provides information on potential microbially mediated biogeochemical cycles in tundra ecosystems.

2019-06-03 | GSE97107 | GEO

soil metagenome

Project description:Soil bacterial community Targeted loci environmental

| PRJNA304340 | ENA

uncultured bacterium

Project description:Soil bacterial community Targeted Locus/Loci

| PRJNA165875 | ENA

Wheat soil community

Project description:Wheat soil community Targeted loci environmental

| PRJNA449553 | ENA

GeoChip data from fungal community in Alaskan tundra soil

Project description:The effects of two years' winter warming on the overall fungal functional gene structure in Alaskan tundra soil were studies by the GeoChip 4.2 Resuts showed that two years' winter warming changed the overall fungal functional gene structure in Alaskan tundra soil.

2019-03-07 | GSE127899 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data