Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Soil Bacteria Metagenomic assembly

PROVIDER: PRJNA350726 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4454050.fastq.gz	Fastqsanger.gz
	SRR4454060.fastq.gz	Fastqsanger.gz
	SRR4454051.fastq.gz	Fastqsanger.gz
	SRR4454061.fastq.gz	Fastqsanger.gz
	SRR4454042.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

A comprehensive study to understand the effects of climate warming, simulated by soil transplant, on soil microbial community and its feedback responses

Project description:Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of climate warming and cooling on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles, four years after soil transplant over large transects from northern (N site) to central (NC site) and southern China (NS site) and vice versa. Four years after soil transplant, soil nitrogen components, microbial biomass, community phylogenetic and functional structures were altered. Microbial functional diversity, measured by a metagenomic tool named GeoChip, and phylogenetic diversity are increased with temperature, while microbial biomass were similar or decreased. Nevertheless, the effects of climate change was overridden by maize cropping, underscoring the need to disentangle them in research. Mantel tests and canonical correspondence analysis (CCA) demonstrated that vegetation, climatic factors (e.g., temperature and precipitation), soil nitrogen components and CO2 efflux were significantly correlated to the microbial community composition. Further investigation unveiled strong correlations between carbon cycling genes and CO2 efflux in bare soil but not cropped soil, and between nitrogen cycling genes and nitrification, which provides mechanistic understanding of these microbe-mediated processes and empowers an interesting possibility of incorporating bacterial gene abundance in greenhouse gas emission modeling.

2013-10-30 | GSE51592 | GEO

soil metagenome

Project description:Metagenomic sequence from soil bacteria

| PRJDB5367 | ENA

soil metagenome

Project description:Soil fungi Metagenomic assembly

| PRJNA309233 | ENA

soil metagenome

Project description:FOREST SOIL Metagenomic assembly

| PRJNA353265 | ENA

soil metagenome

Project description:soil metagenome Metagenomic assembly