Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes

ABSTRACT: Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes

OTHER RELATED OMICS DATASETS IN: GSE89480

PROVIDER: PRJNA352342 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4875300.fastq.gz	Fastqsanger.gz
	SRR4875310.fastq.gz	Fastqsanger.gz
	SRR4875320.fastq.gz	Fastqsanger.gz
	SRR4875301.fastq.gz	Fastqsanger.gz
	SRR4875311.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Expression profiles of nine Fusarium fujikuroi strains revealed common and different sets of up-regulated genes

Project description:We provide genome sequences of altogether 9 F. fujikuroi and one F. oxysporum (outgroup) strains, all isolated from rice plants in different geographical regions of the world, and searched for differences in genome structure, chromosome size, secondary metabolite production, virulence on rice, and in vitro and in planta transcriptome profiles. Despite their high relatedness on genome level, they differ significantly in their ability to infect rice, to form asexual spores (micro-and macroconidia), and to produce secondary metabolites. To gain insight into these differences, we compared the transcriptome of the ten strains in infected rice roots with that of liquid culture at low and high nitrogen (6 mM and 60 mM Gln) in vitro conditions by a RNA sequencing approach.

2017-09-28 | GSE89480 | GEO

In planta expression profiles of five Fusarium fujikuroi species complex (FFC) isolates revealed common and different sets of up-regulated genes

Project description:In planta expression profiles of five Fusarium fujikuroi species complex (FFC) isolates revealed common and different sets of up-regulated genes

| PRJNA311604 | ENA

In planta expression profiles of five Fusarium fujikuroi species complex (FFC) isolates revealed common and different sets of up-regulated genes

Project description:The five FFC strains analyzed are able to penetrate maize roots and grow invasively, the efficiency of this growth as well as the ability to subsequently grow in other parts of maize plants differ significantly. To gain insight into these differences, we examined the transcriptome of the five isolates in infected maize roots with that of in vitro (CM agar) growing fungi by a RNA sequencing approach.

2016-12-06 | GSE77595 | GEO

Nitrogen-regulated genes in Fusarium fujikuroi

Project description:Genome-wide search for AreA-dependent and -independent nitrogen-regulated genes in Fusarium fujikuroi by cross-species hybridization with F. verticillioides microarrays. Keywords: glutamine treatmet Compare expression of genes of Fusarium fujikuroi wild-type and areA mutant strains responding to nitrogen limitation or sufficiency.

2010-05-15 | E-GEOD-10692 | biostudies-arrayexpress

Meis2 sets up the ground state for palatal osteogenesis in mice

Project description:Meis2 sets up the ground state for palatal osteogenesis in mice

| PRJNA602081 | ENA

Yin Yang 1 sets up the stage for cerebellar astrocyte maturation

Project description:Yin Yang 1 sets up the stage for cerebellar astrocyte maturation

| PRJNA701964 | ENA

Genome-wide transcriptome analysis of Fusarium fujikuroi Δset2 and Δash1 mutants

Project description:We performed genome-wide transcriptome analyses of the Fusarium fujikuroi wild type (WT) in comparison to deletion mutants of the histone methyltransferase genes SET2 and ASH1 The results show that the two methyltransferases control large sets of genes involved in primary and secondary metabolism due to the modifications of the chromatin structure (methylation of histone 3 lysine 36)

2017-11-14 | GSE90947 | GEO

Genome-wide transcriptome analysis of Fusarium fujikuroi Δset1 and Δkdm5 mutants

Project description:We performed genome-wide transcriptome analyses of the Fusarium fujikuroi wild type (WT) in comparison to deletion mutants of the histone methyltransferase gene SET1 and the histone demethylase gene KDM5 The results show that Set1 and Kdm5 control large sets of genes involved in primary and secondary metabolism due to the modifications of the chromatin structure (methylation of histone 3 lysine 4)

2018-08-24 | GSE90948 | GEO

Nitrogen-regulated genes in Fusarium fujikuroi

2008-11-21 | GSE10692 | GEO

Fusarium fujikuroi

Project description:Fusarium fujikuroi Genome sequencing and assembly

| PRJNA231623 | ENA