Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oceanicoccus sagamiensis strain:NBRC 107125

ABSTRACT: Oceanicoccus sagamiensis strain:NBRC 107125 Genome sequencing

PROVIDER: PRJNA355353 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_002117105.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Vibrio sagamiensis NBRC 104589

Project description:Vibrio sagamiensis NBRC 104589 genome sequencing project

| PRJDB343 | ENA

Vibrio sagamiensis NBRC 104589

Project description:Genome sequence of Vibrio sagamiensis NBRC 104589

| PRJDB730 | ENA

Expression analysis of Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant

Project description:Investigation of whole genome gene expression level changes in a Gluconacetobacter xylinus NBRC 3288 delta-fnrG mutant, compared to the wild-type strain.

2021-07-16 | GSE41775 | GEO

Micromonospora sagamiensis strain:DSM 43912

Project description:Micromonospora sagamiensis strain:DSM 43912 Genome sequencing and assembly

| PRJNA256906 | ENA

Algicola sagamiensis

Project description:Algicola sagamiensis overview

| PRJNA175086 | ENA

Vibrio sagamiensis

Project description:Vibrio sagamiensis overview

| PRJNA172510 | ENA

Algicola sagamiensis DSM 14643

Project description:Algicola sagamiensis DSM 14643

| PRJNA174974 | ENA

Transcriptome analysis of Bacillus subtilis NBRC 16449 grown on surface of boiled soybeans under the similar condition to production of Japanese traditional soybean-fermented food "natto"

Project description:Purpose:The goals of this study are to clarify the B. subtilis NBRC 16449 response to soybeans. Methods: B. subtilis NBRC 16449 cells were aerobically cultured in liquid LB, LB solidified with agar, or on surface of boiled soybeans to logarithmic growth phase. Total RNAs were extracted from bacterial cells by Hot-Phenol method. Samples for RNA-seq were prepared according to Illmina protocol available from the manufacture. The sequence reads that passed quality filters were analyzed at the transcript isoform level with bowtie v0.11.2. Results: Using an optimized data analysis workflow, we mapped around 15 million sequence reads per sample to the whole genome of B. subtilis BEST195 and identified 4271 transcripts in B. subtilis NBRC 16449 with Bowtie aligner. Read count per genome was extracted from known gene annotations with HTSeq program. Compared the transcriptomes of B. subtilis NBRC 16449 grown on LB solidified with agar to that grown on surface of boiled soybeans, about 5% of genes showed the different expression levels.

2020-11-02 | GSE109523 | GEO

Hymenobacter nivis strain:NBRC 111535

Project description:Hymenobacter nivis strain:NBRC 111535 Genome sequencing

| PRJNA453646 | ENA

Porifericola rhodea strain:NBRC 107748

Project description:Porifericola rhodea strain:NBRC 107748 Genome sequencing

| PRJNA940350 | ENA