Nodularia spumigena
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA35537 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| Other | ||||
| SRR1571498.fastq.gz | Fastqsanger.gz | |||
| SRR1572178.fastq.gz | Fastqsanger.gz | |||
| SRR21582751.fastq.gz | Fastqsanger.gz | |||
| SRR21582752.fastq.gz | Fastqsanger.gz |
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Project description:Toxic, bloom-forming cyanobacterium
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Project description:Nodularia spumigena is a toxic, filamentous cyanobacterium capable to fix atmospheric N2, which is often dominating cyanobacterial bloom events in the Baltic Sea and other brackish water systems worldwide. Phosphate (P) limitation has been considered as one environmental parameter that is somehow promoting the establishment of cyanobacterial mass developments. In the present study, we analyzed the response of the N. spumigena strain CCY9914 towards strong P limitation in an experimental approach. Filaments of N. spumigena were incubated under P-replete and P-deplete conditions for 21 days. Samples for RNA-seq were collected after 7 and 14 days. Growth of the strain was diminished under P-deplete conditions, however, filaments contained more polyphosphate under P-deplete compared to P-replete conditions. High polyphosphate contents were also detected within heterocysts. After 7 days, approximately 100 genes were upregulated in P-deplete filaments, among them was a high proportion of genes encoding proteins related to P-homeostasis such as transport systems for different P species. Many of these genes became also up-regulated after 14 days compared to 7 days in filaments grown under P-replete conditions, which was consistent with the almost complete consumption of dissolved P in these cultures after 14 days. In addition to genes directly related to P starvation, for example genes encoding proteins for bioactive compound synthesis, gas vesicle formation, or sugar catabolism were stimulated under the P-deplete conditions. Collectively, our data permitted to describe an experimentally validated P-stimulon in N. spumigena CCY9914 and provide evidence that severe P limitation could indeed support bloom formation by this filamentous strain.
2022-12-06 | GSE213384 | GEO
Project description:Toxic, bloom-forming cyanobacterium
| PRJDA27835 | ENA
Project description:Toxic, bloom-forming cyanobacterium
| PRJNA15702 | ENA
Project description:Genomic and functional analysis of the bloom-forming Nodularia spumigena CENA596 in shrimp production ponds
| PRJNA315832 | ENA
Project description:Nodularia spumigena CCY9414 Genome sequencing
| PRJNA185469 | ENA
Project description:Nodularia spumigena is a toxic, filamentous cyanobacterium occurring in brackish waters worldwide, yet forms extensive recurrent blooms in the Baltic Sea. N. spumigena produces several classes of non-ribosomal peptides (NRPs) that are active against several key metabolic enzymes. Previously, strains from geographically distant regions showed distinct NRP metabolic profiles. In this work, conspecific diversity in N. spumigena was studied using chemical and genetic approaches. NRP profiles were determined in 25 N. spumigena strains isolated in different years and from different locations in the Baltic Sea using liquid chromatography-tandem mass spectrometry (LC-MS/MS). Genetic diversity was assessed by targeting the phycocyanin intergenic spacer and flanking regions (cpcBA-IGS). Overall, 14 spumigins, 5 aeruginosins, 2 pseudaeruginosins, 2 nodularins, 36 anabaenopeptins, and one new cyanopeptolin-like peptide were identified among the strains. Seven anabaenopeptins were new structures; one cyanopeptolin-like peptide was discovered in N. spumigena for the first time. Based on NRP profiles and cpcBA-IGS sequences, the strains were grouped into two main clusters without apparent influence of year and location, indicating persistent presence of these two subpopulations in the Baltic Sea. This study is a major step in using chemical profiling to explore conspecific diversity with a higher resolution than with a sole genetic approach.
| S-EPMC5128752 | biostudies-literature
Project description:Cyanobacteria produce a great variety of non-ribosomal peptides. Among these compounds, both acute toxins and potential drug candidates have been reported. The profile of the peptides, as a stable and specific feature of an individual strain, can be used to discriminate cyanobacteria at sub-population levels. In our work, liquid chromatography-tandem mass spectrometry was used to elucidate the structures of non-ribosomal peptides produced by Nodularia spumigena from the Baltic Sea, the coastal waters of southern Australia and Lake Iznik in Turkey. In addition to known structures, 9 new congeners of spumigins, 4 aeruginosins and 12 anabaenopeptins (nodulapeptins) were identified. The production of aeruginosins by N. spumigena was revealed in this work for the first time. The isolates from the Baltic Sea appeared to be the richest source of the peptides; they also showed a higher diversity in peptide profiles. The Australian strains were characterized by similar peptide patterns, but distinct from those represented by the Baltic and Lake Iznik isolates. The results obtained with the application of the peptidomic approach were consistent with the published data on the genetic diversity of the Baltic and Australian populations.
| S-EPMC3564153 | biostudies-literature
Project description:The phosphopantetheinyl transferases (PPTs) are a superfamily of essential enzymes required for the synthesis of a wide range of compounds, including fatty acids, polyketides, and nonribosomal peptide metabolites. These enzymes activate carrier proteins in specific biosynthetic pathways by transfer of a phosphopantetheinyl moiety. The diverse PPT superfamily can be divided into two families based on specificity and conserved sequence motifs. The first family is typified by the Escherichia coli acyl carrier protein synthase (AcpS), which is involved in fatty acid synthesis. The prototype of the second family is the broad-substrate-range PPT Sfp, which is required for surfactin biosynthesis in Bacillus subtilis. Most cyanobacteria do not encode an AcpS-like PPT, and furthermore, some of their Sfp-like PPTs belong to a unique phylogenetic subgroup defined by the PPTs involved in heterocyst differentiation. Here, we describe the first functional characterization of a cyanobacterial PPT based on a structural analysis and subsequent functional analysis of the Nodularia spumigena NSOR10 PPT. Southern hybridizations suggested that this enzyme may be the only PPT encoded in the N. spumigena NSOR10 genome. Expression and enzyme characterization showed that this PPT was capable of modifying carrier proteins resulting from both heterocyst glycoplipid synthesis and nodularin toxin synthesis. Cyanobacteria are a unique and vast source of bioactive metabolites; therefore, an understanding of cyanobacterial PPTs is important in order to harness the biotechnological potential of cyanobacterial natural products.
| S-EPMC1855846 | biostudies-literature