Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RNA-seq of Sand rat (Psammomys obesus) tissues

PROVIDER: PRJNA356886 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5092820_1.fastq.gz	Fastqsanger.gz
	SRR5092820_2.fastq.gz	Fastqsanger.gz
	SRR5092818_1.fastq.gz	Fastqsanger.gz
	SRR5092818_2.fastq.gz	Fastqsanger.gz
	SRR5092819_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Project description:Genome sequencing of the Sand rat, Psammomys obesus

| PRJNA356536 | ENA

Maned rat and fat sand rat genome assembly

Project description:Maned rat (Lophiomys imbausi) and fat sand rat (Psammomys obesus) whole genome assembly

| PRJEB44074 | ENA

Psammomys obesus

Project description:Psammomys obesus overview

| PRJNA355333 | ENA

Psammomys obesus

Project description:Psammomys obesus Transcriptome or Gene expression

| PRJNA299528 | ENA

Psammomys obesus isolate:Psa_ob012049795

Project description:Psammomys obesus isolate:Psa_ob012049795 Genome sequencing and assembly

| PRJNA355058 | ENA

Diel multi-tissue genome-scale metabolic models of Vitis vinifera

Project description:The first GSSM of V. vinifera was reconstructed (MODEL2408120001). Tissue-specific models for stem, leaf, and berry of the Cabernet Sauvignon cultivar were generated from the original model, through the integration of RNA-Seq data. These models have been merged into diel multi-tissue models to study the interactions between tissues at light and dark phases.

2024-09-02 | MODEL2408160001 | BioModels

Psammomys obesus

Project description:Parental diet affects metabolism, obesity and hypothalamic DNA methylation in Psammomys obesus

| PRJNA304410 | ENA

Comparison of cultured and sand fly-derived promastigotes by means of RNA-Seq

Project description:A laboratory colony of Phlebotomus perniciosus sand flies was maintained. Sand flies were infected with cultured Leishmania infantum promastigotes in stationary phase. Ten infected sand flies were dissected after 5 days and promastigotes within the gut pooled. The cells were immediately washed in PBS once and lysed in TRIzol reagent (Life Technologies). RNA isolation was completed according to the manufacturer's instructions, obtaining 63ng. RNA-seq libraries were generated using the spliced leader sequence for second strand synthesis (Cuypers et al., 2017; Haydock et al., 2015), thus allowing for specific amplification of sequences from L. infantum promastigotes, thus avoiding contamination with material from the sand fly gut. Single-end sequencing was performed in an Illumina HiSeq2500 instrument and data analysis was conducted using bowtie2, samtools, featureCounts and Geneious. The main findings are: i) substantial differences in differential gene expression between sand fly-derived (sfPro) and cultured (acPro) promastigotes; and ii) over-expression of genes involved in metacyclogenesis in sfPro vs. acPro, including gp63 genes, autophagy genes, etc.

2018-08-15 | GSE102668 | GEO

Study on the expression of long-chain non coding RNA and coding gene in patients with colorectal cancer

Project description:Interventions: lesion tissues vs. adjacent tissues of colorectal cancer patients:nil Primary outcome(s): RNA Study Design: Factorial

| 2693518 | ecrin-mdr-crc

Human gastric mucosa: 3 paired hTERT-negative para cancerous tissue (Control) vs. hTERT-positive gastric cancer tissue

Project description:The lncRNA expression profiles in three pairs of hTERT-positive gastric cancer tissue sand hTERT-negative para-cancerous tissues. The para-cancerous tissue is at least 5cm away from the cancer tissue. The expression of hTERT of identified by immunohistochemistry before RNA extraction for lncRNA assay.

2014-06-26 | GSE58828 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data