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Herpetosiphon aurantiacus

ABSTRACT: Filamentous soil, water, and sewage bacterium

PROVIDER: PRJNA35869 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR253110.fastq.gz	Fastqsanger.gz
	SRR9434230.fastq.gz	Fastqsanger.gz
	SRR9434240.fastq.gz	Fastqsanger.gz
	SRR9434231.fastq.gz	Fastqsanger.gz

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Herpetosiphon aurantiacus DSM 785 strain:ATCC 23779

Project description:Filamentous soil, water, and sewage bacterium

| PRJNA16523 | ENA

Herpetopanone, a diterpene from Herpetosiphon aurantiacus discovered by isotope labeling.

Project description:The genome of the predatory bacterium Herpetosiphon aurantiacus 114-95T harbors a number of biosynthesis genes, including four terpene cyclase genes. To identify the terpenes biosynthesized from H. aurantiacus 114-95T, we fed the strain with 13C-labeled glucose and, subsequently, searched for characteristic mass shifts in its metabolome. This approach led to the discovery of a new natural product, of which the isotope pattern is indicative for a diterpene originating from the methylerythritol phosphate pathway. After large-scale fermentation of H. aurantiacus 114-95T, the putative diterpene was isolated in sufficient quantity to enable NMR-based structure elucidation. The compound, for which the name herpetopanone is proposed, features a rare octahydro-1H-indenyl skeleton. Herpetopanone bears resemblance to cadinane-type sesquiterpenes from plants, but is structurally entirely unprecedented in bacteria. Based on its molecular architecture, a possible biosynthetic pathway is postulated.

| S-EPMC5704754 | biostudies-literature

Complete genome sequence of the filamentous gliding predatory bacterium Herpetosiphon aurantiacus type strain (114-95(T)).

Project description:Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the phylum Chloroflexi. H. aurantiacus cells are organized in filaments which can rapidly glide. The species is of interest not only because of its rather isolated position in the tree of life, but also because Herpetosiphon ssp. were identified as predators capable of facultative predation by a wolf pack strategy and of degrading the prey organisms by excreted hydrolytic enzymes. The genome of H. aurantiacus strain 114-95(T) is the first completely sequenced genome of a member of the family Herpetosiphonaceae. The 6,346,587 bp long chromosome and the two 339,639 bp and 99,204 bp long plasmids with a total of 5,577 protein-coding and 77 RNA genes was sequenced as part of the DOE Joint Genome Institute Program DOEM 2005.

| S-EPMC3368417 | biostudies-literature

Ktedonobacter racemifer DSM 44963

Project description:Filamentous soil bacterium

| PRJNA27943 | ENA

Geodermatophilus obscurus DSM 43160

Project description:Filamentous soil bacterium

| PRJNA29547 | ENA

Lsr2 and its novel paralogue mediate the adjustment of Mycobacterium smegmatis to unfavorable environmental conditions

Project description:In this study, we analyze the role of Lsr2 as a transcription factor in M. smegmatis, a saprophytic bacterium whose natural habitat (soil and water) substantially differs from that of the obligatory mycobacterial pathogens. In summary, the combined RNA-seq and ChIP-seq data revealed that Lsr2 controls gene expression either directly by binding their promoter regions or indirectly through DNA loop formation.

2021-04-22 | GSE164708 | GEO

Chloroflexus aurantiacus

Project description:Photosynthetic bacterium

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Soil Metaproteome - proteome data analysis

Project description:Phosphorus (P) limitation will play a key role in the productivity of agriculture in the coming decades. Struvite is an ammonium magnesium phosphate mineral that can be recovered from wastewater-treatment plants and can be considered as an alternative source of P. However, the impact of struvite on the plant yield and, particularly, on the soil microbial community is barely known. Here, we tested the impacts of struvite, sewage sludge, and their combination on the barley yield, soil macro and micronutrients, and biochemical and microbiological soil properties. Amendment with struvite alone and its combination with sludge increased the availability of P in soil, the plant uptake of P and Mg, and the barley yield. The analysis of phospholipid fatty acids (PLFAs) and metaproteomics approaches revealed significant effects of struvite on the biomass of Gram-positive bacteria and, particularly, on actinobacterial populations in soil.

2019-03-13 | PXD009595 | Pride

Sphaerobacter thermophilus DSM 20745

Project description:Sewage sludge bacterium

| PRJNA21087 | ENA

Gene expression from the rice leaf elongation zone of 7th leaf under various soil moisture treatments

Project description:Leaf rate elongation is extremely sensitive to soil water status. Global gene expression of the leaf elongation zone was profiled at three different levels of soil moisture in two genotypes. Leaf elongation in IR64 is more sensitive to decreased soil moisture than in moroberekan.

2012-09-26 | GSE41159 | GEO

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