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Thermotoga petrophila

ABSTRACT: Thermotoga petrophila overview

PROVIDER: PRJNA35913 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR9434270.fastq.gz	Fastqsanger.gz
	SRR9434268.fastq.gz	Fastqsanger.gz
	SRR9434269.fastq.gz	Fastqsanger.gz

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Thermotoga petrophila

Project description:Thermotoga naphthophila overview

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Thermotoga maritima wild type minimal media expression analysis

Project description:An eight chip study using total RNA recovered from separate wild-type cultures of Thermotoga maritima at mid-log with 3 different minimal sugar media.

2012-07-03 | GSE28822 | GEO

Biosynthesis of membrane-spanning ether lipids in Thermotoga maritima

Project description:This study was conducted to identify the genes involved in the synthesis of membrane-spanning ether lipids in Thermotoga maritima MSB8.

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Thermotoga maritima wild type minimal media expression analysis

Project description:An eight chip study using total RNA recovered from separate wild-type cultures of Thermotoga maritima at mid-log with 3 different minimal sugar media. A eight-chip study using total RNA recovered from separate wild-type cultures of Thermotoga maritima at mid-log with 3 different minimal sugar media. 4 biological replicates maltose, 2 biological replicates L-arabinose, 2 biological replicates cellobiose.

2012-07-02 | E-GEOD-28822 | biostudies-arrayexpress

Biosynthesis of membrane-spanning ether lipids in Thermotoga maritima.

Project description:This study was conducted to identify the proteins involved in the synthesis of membrane-spanning ether lipids in Thermotoga maritima.

2023-10-03 | PXD035794 | Pride

Thermotoga species transcription on glucose and a mix of polysaccharides

Project description:Hyperthermophilic bacteria of the genus Thermotoga are known to utilize a wide range of simple and complex polysaccharides. T. maritima's transcriptional response to a variety of mono- and poly-saccharides was previously studied to assign functions to genes involved in carbohydrate uptake and utilization. To compare and contrast closely-related members of the Thermotoga genus, a four-species microarray was developed by expanding a whole genome T. maritima array to include unique genes from three other species (T. neapolitana, T. petrophila, and T. sp. RQ2). This multi-species array was used to investigate the diversity of the genus, specifically the response of each of the four species to a mixture of polysaccharides (galactomannan, glucomannan, xylan, pectin, lichenan, and carboxymethyl cellulose).

2012-01-05 | GSE29557 | GEO

Structure of a novel thermostable GH51 α-L-arabinofuranosidase from Thermotoga petrophila RKU-1.

Project description:α-L-arabinofuranosidases (EC 3.2.1.55) participate in the degradation of a variety of L-arabinose-containing polysaccharides and interact synergistically with other hemicellulases in the production of oligosaccharides and bioconversion of lignocellulosic biomass into biofuels. In this work, the structure of a novel thermostable family 51 (GH51) α-L-arabinofuranosidase from Thermotoga petrophila RKU-1 (TpAraF) was determined at 3.1 Å resolution. The TpAraF tertiary structure consists of an (α/β)-barrel catalytic core associated with a C-terminal β-sandwich domain, which is stabilized by hydrophobic contacts. In contrast to other structurally characterized GH51 AraFs, the accessory domain of TpAraF is intimately linked to the active site by a long β-hairpin motif, which modifies the catalytic cavity in shape and volume. Sequence and structural analyses indicate that this motif is unique to Thermotoga AraFs. Small angle X-ray scattering investigation showed that TpAraF assembles as a hexamer in solution and is preserved at the optimum catalytic temperature, 65°C, suggesting functional significance. Crystal packing analysis shows that the biological hexamer encompasses a dimer of trimers and the multiple oligomeric interfaces are predominantly fashioned by polar and electrostatic contacts.

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Thermotoga species transcription on glucose and a mix of polysaccharides

2012-01-05 | E-GEOD-29557 | biostudies-arrayexpress

Thermotoga petrophila RKU-1

Project description:Anaerobic thermophile isolated from oil reservoir

| PRJNA17089 | ENA

Thermotoga petrophila RKU-10

Project description:Oil-reservoir bacterium

| PRJNA33663 | ENA