Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fungus metagenome

ABSTRACT: Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Tricholoma matsutake - Pinus sylvestris Metatranscriptome - Plate2 metatranscriptome

PROVIDER: PRJNA365663 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5428180_1.fastq.gz	Fastqsanger.gz
	SRR5428180_2.fastq.gz	Fastqsanger.gz
	SRR5428171_1.fastq.gz	Fastqsanger.gz
	SRR5428171_2.fastq.gz	Fastqsanger.gz
	SRR5428181_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

fungus metagenome

Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Tulasnella calospora - Serapias vomeracea metatranscriptome

| PRJNA365772 | ENA

root metagenome

Project description:Metatranscriptome of Pinus sylvestris mycorrhizal root tips inoculated with Tricholoma matsutake from Vantaa, Uusimaa, Finland - TrimaECM-1

| PRJNA423319 | ENA

root metagenome

Project description:Metatranscriptome of Pinus sylvestris mycorrhizal root tips inoculated with Tricholoma matsutake from Vantaa, Uusimaa, Finland - TrimaECM-2

| PRJNA423320 | ENA

fungus metagenome

Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Rhyzoscyphus and Meliniomyces - Vaccinium myrtillus metatranscriptome

| PRJNA365771 | ENA

fungus metagenome

Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Pisolithus microcarpus 441 Eucalyptus globulus metatranscriptome

| PRJNA366436 | ENA

fungus metagenome

Project description:Mycorrhizal fungal microbial communities from INRA, France, for Deep Transcriptomics studies - Amanita muscaria MEII Populus tremula x tremuloides metatranscriptome

| PRJNA366437 | ENA

Scots pine (Pinus sylvestris) differentially interacts with Cenococcum geophilum and other simultaneously inoculated mycorrhizal (ECM) fungi

Project description:To identify specific gene networks induced in host roots by C. geophilum, we inoculated seedlings of Scots pine simultaneously with C. geophilum and either Suillus granulatus or Rhizopogon roseolus, two common ECM fungi associated to pines. We then measured the differential expression of Scots pine genes in the respective mycorrhizas using oligoarrays. We performed 14 hybridizations (NimbleGen) with samples derived from Pinus sylvestris mycorrhiza with Cenococcum geophilum, Rhizopogon roseolus or Suillus granulatus (3 biological replicates each), as well as from non-mycorrhizal control roots (two replicates). Only the Pinus-derived sequences from the array were considered for this analysis. All samples were labeled with Cy3.

2016-08-01 | E-GEOD-80549 | biostudies-arrayexpress

fungus metagenome

Project description:Metatranscriptome of Pinus sylvestris inoculated with Acephala macrosclerotium - Myc Acephala macrosclerotium_Pinus sylvestris 1R metatranscriptome

| PRJNA406740 | ENA

fungus metagenome

Project description:Metatranscriptome of Pinus sylvestris inoculated with Acephala macrosclerotium - Myc Acephala macrosclerotium_Pinus sylvestris 2R metatranscriptome

| PRJNA406741 | ENA

fungus metagenome

Project description:Metatranscriptome of Pinus sylvestris inoculated with Acephala macrosclerotium - Myc Acephala macrosclerotium_Pinus sylvestris 3R metatranscriptome

| PRJNA406742 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data