Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Salinivibrio costicola subsp. alcaliphilus strain:DSM 16359

ABSTRACT: Salinivibrio costicola subsp. alcaliphilus strain:DSM 16359 Genome sequencing and assembly

PROVIDER: PRJNA368812 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Salinivibrio costicola

Project description:Salinivibrio costicola overview

| PRJNA183975 | ENA

Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651

Project description:Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 Genome sequencing and assembly

| PRJNA196485 | ENA

Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651

Project description:Salinivibrio costicola subsp. costicola ATCC 33508 = LMG 11651 Genome sequencing and assembly

| PRJNA183873 | ENA

Salinivibrio costicola

Project description:Salinivibrio costicola Genome sequencing and assembly

| PRJNA882206 | ENA

Salinivibrio costicola strain:M318

Project description:Salinivibrio costicola strain:M318 Genome sequencing and assembly

| PRJNA612975 | ENA

Transcriptome analysis of collagen-adhered S. gallolyticus subsp. gallolyticus [DSM 16831]

Project description:Streptococcus gallolyticus subsp. gallolyticus is a commensal of the human gastrointestinal tract and a pathogen of infective endocarditis and other biofilm-associated infections with exposed collagen. Therefore, this study focuses on the characterization of the biofilm formation and collagen adhesion of S. gallolyticus subsp. gallolyticus under different conditions. It has been observed that lysozyme triggers biofilm formation divergently in the analyzed S. gallolyticus subsp. gallolyticus strains. The transcriptome analysis was performed for two strains which form more biofilm in the presence of lysozyme. Lysozyme leads to higher expression of genes of transcription and translation, of the dlt operon (cell wall modification), of hydrogen peroxide resistance proteins and of two immunity proteins which could be involved in biofilm formation. Furthermore, the adhesion ability of 73 different S. gallolyticus subsp. gallolyticus strains to collagen type I and IV was analyzed. High adhesion ability was observed for the strain UCN 34, whereas the strain DSM 16831 adhered only marginally to collagen. The full genome microarray analysis revealed strain-dependent gene expression due to adhesion. The expression of genes of a transposon and a phage region in strain DSM 16831 were increased, which corresponds to lateral gene transfer. Adherence to collagen leads to a change in the expression of genes of nutrients uptake in the strain UCN 34.

2017-05-17 | GSE98953 | GEO

Paracoccus alcaliphilus strain:dsm 8512

Project description:Paracoccus alcaliphilus DSM 8512 genome sequencing

| PRJNA303795 | ENA

Gracilibacillus alcaliphilus strain:DSM 102988 | isolate:DSM 102988

Project description:Gracilibacillus alcaliphilus DSM 102988 genome sequencing

| PRJNA695641 | ENA

Paracoccus alcaliphilus strain:DSM 8512

Project description:Paracoccus alcaliphilus strain:DSM 8512 Genome sequencing and assembly

| PRJNA689372 | ENA

Paracoccus alcaliphilus

Project description:Paracoccus alcaliphilus overview