Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anopheles gambiae

ABSTRACT: Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

PROVIDER: PRJNA369336 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5219340_1.fastq.gz	Fastqsanger.gz
	SRR5219340_2.fastq.gz	Fastqsanger.gz
	SRR5219350_1.fastq.gz	Fastqsanger.gz
	SRR5219350_2.fastq.gz	Fastqsanger.gz
	SRR5219360_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Project description:Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

| PRJNA665038 | ENA

Mus musculus

Project description:Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

| PRJNA113703 | ENA

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Project description:Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

| PRJNA735267 | ENA

Genome-wide maps of chromatin state in HSC, HPC7 and lineage-committed cells

Project description:Genome-wide maps of chromatin state in HSC, HPC7 and lineage-committed cells

| PRJNA419184 | ENA

Genome-wide maps of chromatin state in pre-osteoblastic and lineage-committed cells.

Project description:Genome-wide maps of chromatin state in pre-osteoblastic and lineage-committed cells.

| PRJNA774996 | ENA

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Project description:Genome-wide maps of chromatin state (H3K4me3, H3K9me3, H3K27me3, H3K36me3, H4K20me3) in pluripotent and lineage-committed cells We report the application of single-molecule-based sequencing technology for high-throughput profiling of histone modifications in mammalian cells. By obtaining over four billion bases of sequence from chromatin immunoprecipitated DNA, we generated genome-wide chromatin-state maps of mouse embryonic stem cells, neural progenitor cells and embryonic fibroblasts. We find that lysine 4 and lysine 27 trimethylation effectively discriminates genes that are expressed, poised for expression, or stably repressed, and therefore reflect cell state and lineage potential. Lysine 36 trimethylation marks primary coding and non-coding transcripts, facilitating gene annotation. Trimethylation of lysine 9 and lysine 20 is detected at satellite, telomeric and active long-terminal repeats, and can spread into proximal unique sequences. Lysine 4 and lysine 9 trimethylation marks imprinting control regions. Finally, we show that chromatin state can be read in an allele-specific manner by using single nucleotide polymorphisms. This study provides a framework for the application of comprehensive chromatin profiling towards characterization of diverse mammalian cell populations. Histone H3 or H4 tri-methylation ChIP-Seq in singlicate from murine embryonic stem (ES) cells, ES-derived neural precursor cells, and embryonic fibroblasts.

2008-07-24 | E-GEOD-12241 | biostudies-arrayexpress

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

2008-07-25 | GSE12241 | GEO

Mus musculus

Project description:Genome-wide maps of Sox/Oct partnerships pluripotent and lineage-committed cells

| PRJNA185339 | ENA

Molecular characterization of bat embryonic fibroblasts and induced pluripotent stem cells [ATAC-Seq]

Project description:Genome-wide maps of chromatin state in induced pluripotent bat stem cells and fibroblasts

2023-02-27 | GSE221960 | GEO

Homo sapiens

Project description:Genome-wide maps of chromatin state in pluripotent human embryonic stem cells.

| PRJNA260536 | ENA