Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Root metagenome

ABSTRACT: Root nodule microbial communities of legume samples collected from Mexico - Siratro Mexico nodule mix metagenome

PROVIDER: PRJNA375140 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5829600_1.fastq.gz	Fastqsanger.gz
	SRR5829600_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

root metagenome

Project description:Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico pink nodule metagenome

| PRJNA375141 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule metagenome

| PRJNA375142 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana - Siratro red BW metagenome

| PRJNA365469 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana - Siratro white BW metagenome

| PRJNA365470 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana - Cow pea red BW metagenome

| PRJNA365466 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana - Cow pea white BW metagenome

| PRJNA365467 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from USA, Mexico and Botswana - M. trunc garden sep15 metagenome

| PRJNA365468 | ENA

root metagenome

Project description:Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG metagenome

| PRJNA375676 | ENA

Gene expression data from phosphinothricin (PPT) treated Medicago truncatula root nodules

2012-05-09 | GSE34155 | GEO

Gene expression data from phosphinothricin (PPT) treated Medicago truncatula root nodules

Project description:Nitrogen assimilation in plants is a tightly regulated process that integrates developmental and environmental signals. The legume-rhizobial symbiosis results in the formation of a specialized organ called root nodule, where the rhizobia fixes atmospheric nitrogen into ammonia. Ammonia is assimilated by the plant enzyme glutamine synthetase, which is specifically inhibited by PPT. The expression of key genes related to the regulation of root nodule metabolism will likely be affected by glutamine synthetase inhibition. We used microarrays to detail the global programme of gene expression in response to Glutamine synthetase inhibition in root nodules and identified genes differentially expressed over a time course. Medicago truncatula nodulated plants (20 days post inoculation) were treated with 0.25 mM of PPT. Root nodules were harvested at 4, 8 and 24 hours after PPT application. As a control, root nodules collected just before PPT application were used (PPT 0h). Three biological replicates consisting of pools of root nodules harvested from five distinct plants were used for RNA extraction and hybridization on Affymetrix GeneChips.

2012-05-08 | E-GEOD-34155 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data