Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Micropterus floridanus

ABSTRACT: Development and validation of single nucleotide polymorphism markers from GBS for parentage assignment in the Florida Bass (Micropterus floridanus)

PROVIDER: PRJNA376843 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5309253.fastq.gz	Fastqsanger.gz
	SRR5309254.fastq.gz	Fastqsanger.gz
	SRR5309255.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Micropterus floridanus

Project description:Micropterus floridanus overview

| PRJNA255534 | ENA

Micropterus floridanus

Project description:Micropterus floridanus Transcriptome or Gene expression

| PRJNA248150 | ENA

Micropterus floridanus isolate:GALMBF000

Project description:Micropterus floridanus isolate:GALMBF000 Genome sequencing and assembly

| PRJNA398142 | ENA

Micropterus salmoides

Project description:Largemouth Bass (Micropterus salmoides) Transcriptome

| PRJNA320202 | ENA

Acute hypoxia changes the utilization mode of glucose / lipid in the liver of the largemouth bass (Micropterus salmoides)

Project description:In the present study, we used NGST to characterize mRNA-seq of control-, moderate hypoxia-treated and severe hypoxia-treated Micropterus salmoides livers to elucidate the molecular mechanisms of hypoxia adaptation. This is the first report on integrated analysis of the tissue specific and temporal changes in gene expression in largemouth bass (Micropterus salmoides) exposed to hypoxia could reveal mechanisms of hypoxia adaptation. We provide a good case study with which to analyse mRNA expression and profile non-model fish species using NGST.

2020-07-22 | GSE134616 | GEO

Micropterus salmoides

Project description:GBS raw data in Micropterus salmoides

| PRJNA769836 | ENA

Potential role of miRNA in acute hypoxic response of largemouth bass (Micropterus salmoides)

Project description:Intensive aquaculture and environmental changes will inevitably lead to hypoxic stress for largemouth bass (Micropterus salmoides). To better understand the hypoxia responds mechanisms of largemouth bass, we compared the miRNA profile in liver under different environmental DO to determine which miRNAs are most affected during hypoxia. A total of 266 miRNAs were identified, and 84 miRNAs were differentially expressed compared with in control group. GO and KEGG analysis indicated that the miRNAs may play important roles in environment information processing. Specifically, we considered the VEGF signaling pathway, Phosphatidylinositol signaling system and MAPK signaling pathway, the results show that, the 13 miRNAs (miR-15b-5p, miR-30a-3p, miR-133a-3p, miR-19d-5p, miR-1288-3p, miR456, miR-96-5p, miR-23a-3p, miR-23b, miR-214, miR-24, miR-20a-3p and miR-2188-5p) involved in these three pathways are significantly down-regulated during hypoxia stress. And 12 target genes of these miRNAs were showed a higher degree of expression. We found the obvious negative correlation between miRNA and their target mRNAs, providing several miRNA-mRNA interaction networks in largemouth bass in response to hypoxia. Although relatively little information is currently available concerning the biological function of miRNAs identified to date, we strongly suggest that miRNAs play an important role in modulating gene expression involved in the physiological response to hypoxic stress in the fish liver.

2021-01-20 | GSE143641 | GEO

Micropterus salmoides

Project description:Virus Discovery in hyperpigmented skin lesions of largemouth bass (Micropterus salmoides)

| PRJNA785556 | ENA

Sylvilagus floridanus

Project description:Sylvilagus floridanus overview

| PRJNA955883 | ENA

Pleurotus floridanus

Project description:Pleurotus floridanus overview

| PRJNA681963 | ENA