Zea mays cultivar:B73
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA377727 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR5310810.fastq.gz | Fastqsanger.gz | |||
| SRR5310820.fastq.gz | Fastqsanger.gz | |||
| SRR5310811.fastq.gz | Fastqsanger.gz | |||
| SRR5310821.fastq.gz | Fastqsanger.gz | |||
| SRR5310812.fastq.gz | Fastqsanger.gz |
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Project description:We used LM-RNAseq to compare the molecular fingerprints of cells enriched for subdomains within Selaginella, Equisetum, Arabidopsis and maize shoot apices. Three apical domains were isolated from the Selaginella and Equisetum SAMs: the AC domain, comprising the lone AC; the core domain, comprising the cells below the AC and above the initiating leaf primordium; and the initiating leaf primordium. LM-RNAseq analyses of these shoot apical subdomains generated hundreds of significantly DEGs for each cell type relative to whole-plant transcriptomes based on an FDR ⤠0.05. These data were analyzed for the presence of homologous developmental genetic programs across these three species, and for the identification of unique developmental programs operating within each species.
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Project description:These RNA-seq samples represent ten different tissue types for the fifth version of the maize reference genome B73, sequenced by the NAM Consortium Group. These samples correspond to project ID PRJEB32225.
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