Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schmidtea polychroa

ABSTRACT: Schmidtea polychroa Transcriptome or Gene expression

PROVIDER: PRJNA379151 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5345362_1.fastq.gz	Fastqsanger.gz
	SRR5345362_2.fastq.gz	Fastqsanger.gz
	SRR5345363_1.fastq.gz	Fastqsanger.gz
	SRR5345363_2.fastq.gz	Fastqsanger.gz
	SRR5345364_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Schmidtea polychroa

Project description:Schmidtea polychroa Transcriptome

| PRJNA271420 | ENA

Schmidtea polychroa

Project description:Schmidtea polychroa overview

| PRJNA312545 | ENA

Schmidtea polychroa

Project description:Schmidtea polychroa high resolution developmental transcriptomic time-course

| PRJNA271576 | ENA

Prinia polychroa

Project description:Prinia polychroa overview

| PRJNA998995 | ENA

Schmidtea mediterranea

Project description:Schmidtea mediterranea Transcriptome or Gene expression

| PRJNA241456 | ENA

Schmidtea mediterranea

Project description:Schmidtea mediterranea Transcriptome or Gene expression

| PRJNA208294 | ENA

Prinia polychroa strain:NA

Project description:Prinia polychroa

| PRJNA965594 | ENA

Schmidtea mediterranea S2F2

Project description:Schmidtea mediterranea S2F2 Transcriptome or Gene expression

| PRJNA215409 | ENA

Schmidtea polychroa high resolution developmental transcriptomic time-course

Project description:Classical embryological studies revealed that during mid-embryogenesis vertebrates show similar morphologies. This “phylotypic stage” has recently received support from transcriptome analyses, which have also detected similar stages in nematodes and arthropods. A conserved stage in these three phyla has led us to ask if all animals pass through a universal definitive stage as a consequence of ancestral constraints on animal development. Previous work has suggested that HOX genes may comprise such a ‘zootypic’ stage, however this hypothetical stage has hitherto resisted systematic analysis. We have examined the embryonic development of ten different animals each of a fundamentally different phylum, including a segmented worm, a flatworm, a roundworm, a water bear, a fruitfly, a sea urchin, a zebrafish, a sea anemone, a sponge, and a comb jelly. For each species, we collected the embryonic transcriptomes at ~100 different developmental stages and analyzed their gene expression profiles. We found dynamic gene expression across all of the species that is structured in a stage like manner. Strikingly, we found that animal embryology contains two dominant modules of zygotic expression in terms of their protein domain composition: one involving proliferation, and a second involving differentiation. The switch between these two modules involves induction of the zootype; which in addition to homeobox containing genes, also involves Wnt and Notch signaling as well as forkhead domain transcription factors. Our results provide a systematic characterization of animal universality and identify the points of embryological constraints and flexibility.

2016-02-18 | GSE64653 | GEO

The head-regeneration transcriptome of the planarian Schmidtea mediterranea

Project description:The head-regeneration transcriptome of the planarian Schmidtea mediterranea

2011-07-15 | E-MTAB-607 | biostudies-arrayexpress