Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Schmidtea mediterranea strain:S2

ABSTRACT: Schmidtea mediterranea strain:S2 Genome sequencing and assembly

PROVIDER: PRJNA379262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR5408393_subreads.fastq.gz	Fastqsanger.gz
	SRR5408394.fastq.gz	Fastqsanger.gz
	SRR5408395_1.fastq.gz	Fastqsanger.gz
	SRR5408395_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 256

Similar Datasets

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

2012-04-25 | GSE34326 | GEO

Schmidtea mediterranea

Project description:Schmidtea mediterranea sexual strain pseudohaplotype genome assembly

| PRJNA868541 | ENA

Transcriptome analysis reveals strain-specific and conserved stemness genes in Schmidtea mediterranea

Project description:The transcriptome of the planarian Schmidtea mediterranea is not well characterized. We have used RNA-Seq to characterize the transcriptome in both sexual and asexual strains of S. mediterranea from both untreated and irradiated animals. Moreover, we have performed RNA-Seq on RNA purified from FACS sorted neoblasts and differentiated cells. Together these studies expand our understanding of the planarian transcriptome and have identified strain-specific, neoblast-specific, and conserved transcripts. RNA-Seq was performed on RNA isolated from untreated and irradiated S. mediterranea animals from both the sexual and asexual strains, on FACS purified X1 neoblasts, X2 neoblasts, and Xins differentiated cells. One of the raw data files for GSM847465 is missing. The fasta file is provided at http://genome.vcell.uchc.edu/GenomeData02/Graveley_Lab_Public_Data/Planarian/S.mediterranea_SexNIRmRNA3.fa.gz

2012-04-24 | E-GEOD-34326 | biostudies-arrayexpress

The head-regeneration transcriptome of the planarian Schmidtea mediterranea

Project description:The head-regeneration transcriptome of the planarian Schmidtea mediterranea

2011-07-15 | E-MTAB-607 | biostudies-arrayexpress

Schmidtea mediterranea strain:asexual

Project description:Schmidtea mediterranea Transcriptome Assembly

| PRJNA252663 | ENA

Schmidtea mediterranea strain:CIW4

Project description:Schmidtea mediterranea strain:CIW4 Genome sequencing and assembly

| PRJNA183841 | ENA

Molecular markers to characterize the hermaphroditic reproductive system of the planarian Schmidtea mediterranea

2011-11-01 | GSE32450 | GEO

Expression analysis of purified intestinal phagocytes in Schmidtea mediterranea

Project description:Identification of differentially expressed genes in intestinal phagocytes, compared to non-intestinal cells in Schmidtea mediterranea.

2012-10-01 | GSE35565 | GEO

Molecular markers to characterize the hermaphroditic reproductive system of the planarian Schmidtea mediterranea

Project description:Investigation of differences in gene expression between two strains of the planarian Schmidtea mediterranea. The sexual strain are cross-fertilizing hermaphrodites with reproductive organs that develop post-embryonically and the asexual strain reproduces exclusively by transverse fission and fail to develop reproductive organs. A two chip study using total RNA recovered from asexual and sexual animals. Each chip measures the expression level of 16,797 ESTs from S. mediterranea with 10 60-mer probe pairs (PM/MM) per gene, with two-fold technical redundancy.

2011-11-01 | E-GEOD-32450 | biostudies-arrayexpress

Schmidtea mediterranea

Project description:Schmidtea mediterranea alternate pseudohaplotype genome sequencing

| PRJNA868540 | ENA