Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Bovine viral diarrhea virus intrahost variation

PROVIDER: PRJNA382991 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5448760_1.fastq.gz	Fastqsanger.gz
	SRR5448760_2.fastq.gz	Fastqsanger.gz
	SRR5448761_1.fastq.gz	Fastqsanger.gz
	SRR5448761_2.fastq.gz	Fastqsanger.gz
	SRR5448762_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Gene expression changes in BVDV2-infected BL3 cells

2007-06-30 | GSE6704 | GEO

bovine viral diarrhea virus

Project description:bovine viral diarrhea virus Raw sequence reads

| PRJNA932184 | ENA

Bos taurus

Project description:Metformin affects bovine viral diarrhea virus Infection Transcriptome

| PRJNA766827 | ENA

Differentially-expressed miRNAs in MDBK cells infected with bovine viral diarrhea virus compared to MDBK cells

Project description:Non-canonical microRNAs (miRNAs) are a class of short endogenous RNA molecules with the ability to control development, autophagy, apoptosis and the stress response in eukaryotes by pairing with partially complementary sites in the 3' untranslated regions (UTRs) of targeted genes. Recent studies have demonstrated that miRNAs serve as critical effectors in intricate networks of host-pathogen interactions. Thereforce, the differential expression of miRNAs were evaluated in Madin-Darby bovine kidney (MDBK) cells infected with bovine viral diarrhea virus (BVDV) NADL (100 TCID50/ 0.1 ml) for 6 h compared to normal MDBK cells using Solexa high-throughput sequencing technology (BGI, China).

2014-12-16 | GSE61251 | GEO

Gene expression changes in BVDV2-infected BL3 cells

Project description:The goal of this study was to study the gene expression changes that occurred in BL3 cells that were infected with type 2 bovine viral diarrhea virus (BVDV2). What happens within the cell and how the cell responds to the virus is completely unknown. Keywords: gene expression changes, BVDV2-infected cells, acute infection This study compared the gene expression patterns in noninfected BL3 cells to that in cells that had been infected with BVDV2 for 18 hours. The 2 SAGE libraries were compared to each other to determine which transcripts were present at altered levels in the infected cells. This data will give clues to how the viral infection gives rise to the different pathologies observed in infected animals.

2007-06-30 | E-GEOD-6704 | biostudies-arrayexpress

Project description:Genomic sequence of Bovine Viral Diarrhea Virus isolated from Taiwan

| PRJNA1050865 | ENA

Differentially-expressed miRNAs in MDBK cells infected with bovine viral diarrhea virus compared to MDBK cells

2014-12-16 | E-GEOD-61251 | biostudies-arrayexpress

Bos taurus breed:Holstein

Project description:Host transcriptome response to Mycoplasma bovis and bovine viral diarrhea virus in bovine tissues

| PRJNA1166195 | ENA

Influence of bovine virus diarrhoea virus on the transcriptome profile of bovine endometrium in response to bacterial lipopolysaccharide.

Project description:Infection with non-cytopathic bovine viral diarrhea virus (ncpBVDV) is associated with uterine disease and infertility. This study investigated the influence of ncpBVDV on immune functions of the bovine endometrium by testing the response to bacterial lipopolysaccharide (LPS) at the level of whole-transcriptomic gene expression. Analysis showed that approximately 30% of the 1,006 genes altered by LPS are involved in immune response. Many innate immune genes that typically respond to LPS were inhibited by ncpBVDV including those involved in pathogen recognition, inflammation, interferon response, chemokines, tissue remodeling, cell migration and cell death/survival. Infection with ncpBVDV can thus compromise immune function and pregnancy recognition thereby potentially predisposing infected cows to postpartum bacterial endometritis and reduced fertility.

2015-08-05 | GSE71696 | GEO

Transcriptome analysis of MDBK cells infected with cytopathic bovine viral diarrhea virus (BVDV)

Project description:Transcriptome analysis of MDBK cells infected with cytopathic bovine viral diarrhea virus (BVDV)

| PRJNA700064 | ENA