Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phanerochaete carnosa HHB-10118-sp

ABSTRACT: Phanerochaete carnosa HHB-10118-sp

PROVIDER: PRJNA38425 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR070868.fastq.gz	Fastqsanger.gz
	SRR070869.fastq.gz	Fastqsanger.gz
	SRR070870.fastq.gz	Fastqsanger.gz
	SRR070871.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Typhula setipes strain:HHB-12747-Sp

Project description:Typhula setipes HHB-12747-Sp genome sequencing

| PRJNA346794 | ENA

Platygyra carnosa

Project description:Platygyra carnosa Transcriptome or Gene expression

| PRJNA81573 | ENA

Phanerochaete carnosa

Project description:A white-rot basidiomycete fungus that degrades softwood fibers

| PRJNA39117 | ENA

Bjerkandera adusta HHB-12826-SP SB-22

Project description:Bjerkandera adusta HHB-12826-SP SB-22 Project

| PRJNA80047 | ENA

Bjerkandera adusta HHB-12826-SP SB-22

Project description:Bjerkandera adusta HHB-12826-SP SB-22 Genome sequencing

| PRJNA74757 | ENA

Transcriptomic analysis of Phanerochaete chrysosporium mycelium in presence of oak acetonic extractives

Project description:The transcriptome of Phanerochaete chrysosporium control mycelium was compared to the transcriptome of mycelium grown on oak acetonic extractives containing medium. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Phanerochaete chrysosporium genome sequence version 1. The aim of this study was to determine gene expression changes in Phanerochaete chrysosporium grown on oak extract with a special focus on detoxification systems.

2014-08-13 | GSE54542 | GEO

Project description:WTCCC2 project Schizophrenia (SP) samples

| EGAD00010000262 | EGA

Phanerochaete chrysosporium gene expression in different media

Project description:Transcript profiles of Phanerochaete chrysosporium grown on different substrates were analyszed. Array design was based on the DoE's Joint Genome Institute's gene models for P. chrysosporium version s. The research goal is to identify genes essential for lignocellulose depolymerization.

2014-01-15 | GSE52922 | GEO

Phanerochaete sordida

Project description:Phanerochaete sordida overview

| PRJNA776074 | ENA

Dynamics of the Phanerochaete carnosa transcriptome during growth on aspen and spruce.

Project description:BACKGROUND:The basidiomycete Phanerochaete carnosa is a white-rot species that has been mainly isolated from coniferous softwood. Given the particular recalcitrance of softwoods to bioconversion, we conducted a comparative transcriptomic analysis of P. carnosa following growth on wood powder from one softwood (spruce; Picea glauca) and one hardwood (aspen; Populus tremuloides). P. carnosa was grown on each substrate for over one month, and mycelia were harvested at five time points for total RNA sequencing. Residual wood powder was also analyzed for total sugar and lignin composition. RESULTS:Following a slightly longer lag phase of growth on spruce, radial expansion of the P. carnosa colony was similar on spruce and aspen. Consistent with this observation, the pattern of gene expression by P. carnosa on each substrate converged following the initial adaptation. On both substrates, highest transcript abundances were attributed to genes predicted to encode manganese peroxidases (MnP), along with auxiliary activities from carbohydrate-active enzyme (CAZy) families AA3 and AA5. In addition, a lytic polysaccharide monooxygenase from family AA9 was steadily expressed throughout growth on both substrates. P450 sequences from clans CPY52 and CYP64 accounted for 50% or more of the most highly expressed P450s, which were also the P450 clans that were expanded in the P. carnosa genome relative to other white-rot fungi. CONCLUSIONS:The inclusion of five growth points and two wood substrates was important to revealing differences in the expression profiles of specific sequences within large glycoside hydrolase families (e.g., GH5 and GH16), and permitted co-expression analyses that identified new targets for study, including non-catalytic proteins and proteins with unknown function.

| S-EPMC6234650 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data