Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tuber borchii strain:Tbo3840

ABSTRACT: Tuber borchii Tbo3840 Genome sequencing and assembly

PROVIDER: PRJNA384613 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR5622710_subreads.fastq.gz	Fastqsanger.gz
	SRR5622711_subreads.fastq.gz	Fastqsanger.gz
	SRR5622712_subreads.fastq.gz	Fastqsanger.gz
	SRR5622703_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

Tuber borchii strain:Tbo3840

Project description:Tuber borchii Tbo3840 Transcriptome

| PRJNA384618 | ENA

Tuber borchii

Project description:An edible ascomycete fungus, commonly known as bianchetto white truffle

| PRJNA12855 | ENA

Tuber borchii

Project description:An edible ascomycete fungus, commonly known as bianchetto white truffle

| PRJNA41381 | ENA

Transcriptome metabolic characterization of Tuber borchii SP1, a new Spanish strain for in vitro studies of the Bianchetto truffle

Project description:Truffles are ascomycete hypogeous fungi belonging to the Tuberaceae family of the Pezizales order that grow in ectomycorrhizal symbiosis with tree roots and are known for their peculiar aromas and flavors. Axenic culture of truffle mycelium is problematic because it is not possible in many cases, and the growth rate is meager when it is possible. This limitation prompts searching and characterizing new strains that can be handled in laboratory conditions for basic and applied studies. In this work, a new strain of Tuber borchii (strain SP1) has been isolated and cultured, and its transcriptome has been analyzed under different in vitro culture conditions. The results show that the best T. borchii SP1 growth was obtained using maltose-enriched cultures made with soft-agar and in static submerged cultures made at 22ºC. The transcriptome analysis of this strain cultured in different media indicated that most of the gene transcription effort is due to a limited number of genes (20% of genes account for 80% of the transcription), that the transcription profile of the central metabolism genes was similar in the different conditions analyzed with a transcription signal detected for around 80% of the annotated genes. The gene expression profile suggests that T. borchii uses a fermentative rather than respiratory metabolism, even in aerobic conditions. Finally, there is a reduced expression of genes belonging to secondary metabolite clusters, whereas there is a significative transcription of those involved in producing volatile aromatic compounds.

2023-05-30 | GSE233283 | GEO

Tuber indicum strain:Tubin_1

Project description:Tuber indicum strain:Tubin_1 Genome sequencing and assembly

| PRJNA633038 | ENA

Tuber indicum strain:tin1

Project description:Tuber indicum strain:tin1 Genome sequencing and assembly

| PRJNA542762 | ENA

Bisulfite-Seq and RNA-seq profiling of truffle (Tuber melanosporum)

Project description:We investigated the ascomycete truffle Tuber melanosporum exploits DNA methylation and transcription to cope with the more than 45,000 repeated elements that are present in its genome. Whole-genome bisulfite sequencing and RNA-sequencing, were performed on different developmental stages of this symbiotic hypogeous fungus -fruitbody (FB), free-living mycelium (FLM), and ectomycorrhiza.

2014-01-01 | GSE49700 | GEO

Tuber brumale strain:140227-1

Project description:Tuber brumale strain:140227-1 Genome sequencing and assembly

| PRJNA633036 | ENA

Pleurotus tuber-regium strain:JN18

Project description:Pleurotus tuber-regium strain:JN18 Genome sequencing and assembly

| PRJNA720214 | ENA

Pleurotus tuber-regium strain:KL18

Project description:Pleurotus tuber-regium strain:KL18 Genome sequencing and assembly

| PRJNA475216 | ENA