Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae S288C

ABSTRACT: Sequencing gross chromosomal rearrangements in wild-type, mms21-CH, mre11, mre11-H125N, mms21-CH mre11, and mms21-CH mre11-H125N strains.

PROVIDER: PRJNA386028 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5528060_1.fastq.gz	Fastqsanger.gz
	SRR5528060_2.fastq.gz	Fastqsanger.gz
	SRR5528070_1.fastq.gz	Fastqsanger.gz
	SRR5528070_2.fastq.gz	Fastqsanger.gz
	SRR5528080_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 80

Similar Datasets

Ploidy influences the cellular responses of gross chromosomal rearrangements in Saccharomyces cerevisiae

Project description:We investigated the effects of the ploidy on cellular response in strains carrying various types of gross chromosomal rearrangements.

2011-06-17 | GSE28285 | GEO

Comparative genomic hybridization of Saccharomyces cerevisiae - analysis of gross chromosomal rearrangements

Project description:Determine changes in genomic copy across the entire genome for isolated strains with selected gross chromosomal rearrangements relative to the wild-type strain.

2009-07-04 | E-TABM-714 | biostudies-arrayexpress

Ploidy influences the cellular responses of gross chromosomal rearrangements in Saccharomyces cerevisiae

Project description:We investigated the effects of the ploidy on cellular response in strains carrying various types of gross chromosomal rearrangements. Fourteen mutated strains (6 haploid strains and 8 diploid strains) were compared to their associated parental strain (haploid or diploid parental strain). For each comparison, 2 microarray experiments implying biological replicates were performed.

2011-06-17 | E-GEOD-28285 | biostudies-arrayexpress

Saccharomyces cerevisiae

Project description:Ploidy influences the cellular responses of gross chromosomal rearrangements in Saccharomyces cerevisiae

| PRJNA139363 | ENA

Comparative genomic hybridization of S. cerevisiae strains with selected gross chromosomal rearrangements relative to the wild-type strain

Project description:Determine changes in genomic copy across the entire genome for isolated strains with selected gross chromosomal rearrangements relative to the wild-type strain

2009-08-17 | E-TABM-732 | biostudies-arrayexpress

Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.

Project description:The S. cerevisiae genome is the most well-characterized eukaryotic genome and one of the simplest in terms of identifying open reading frames (ORFs), yet its primary annotation has been updated continually in the decade since its initial release in 1996 (Goffeau et al., 1996). The Saccharomyces Genome Database (SGD; www.yeastgenome.org) (Hirschman et al., 2006), the community-designated repository for this reference genome, strives to ensure that the S. cerevisiae annotation is as accurate and useful as possible. At SGD, the S. cerevisiae genome sequence and annotation are treated as a working hypothesis, which must be repeatedly tested and refined. In this paper, in celebration of the tenth anniversary of the completion of the S. cerevisiae genome sequence, we discuss the ways in which the S. cerevisiae sequence and annotation have changed, consider the multiple sources of experimental and comparative data on which these changes are based, and describe our methods for evaluating, incorporating and documenting these new data.

| S-EPMC3040122 | biostudies-literature

Genomic copy number variation induced by TAQing system in Saccharomyces cerevisiae.

Project description:We developed an artificial genome evolution system, which we termed ‘TAQing’, by introducing multiple genomic DNA double-strand breaks using a heat-activatable endonuclease in mitotic yeast. The heat-activated endonuclease, TaqI, induced random DSBs, which resulted in diverse types of chromosomal rearrangements including translocations. Array comparative genomic hybridization (aCGH) analysis was performed with cell-fused Saccharomyces cerevisiae strains induced genome evolution by TAQing system. Some of copy number variations (CNVs) induced by massive genome rearrangements were detected in the TAQed yeast strains.

2018-05-02 | GSE90025 | GEO

Saccharomyces cerevisiae S288C

Project description:GNF179 Drug Selected Yeast Strains

| PRJNA381796 | ENA

Saccharomyces cerevisiae S288c

Project description:GNF179 Drug Selected Yeast Strains

| PRJNA376603 | ENA

Saccharomyces cerevisiae S288c

Project description:MMV001239 Drug Selected Yeast Strains

| PRJNA320899 | ENA