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Eucalyptus urophylla

ABSTRACT: Eucalyptus is a commercially important forest tree of family Myrtaceae.

PROVIDER: PRJNA39105 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR20073801_1.fastq.gz	Fastqsanger.gz
	SRR20073801_2.fastq.gz	Fastqsanger.gz
	SRR20073802_1.fastq.gz	Fastqsanger.gz
	SRR20073802_2.fastq.gz	Fastqsanger.gz
	SRR20073803_1.fastq.gz	Fastqsanger.gz

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Project description:Eucalyptus urophylla is a commercially important wood crop plantation species due to its rapid growth, biomass yield, and use as bioenergy feedstock. We characterized the genetic diversity and population structure of 332 E. urophylla individuals from 19 geographically defined E. urophylla populations with a reliability of 14,468 single nucleotide polymorphisms (SNPs). We compared the patterns of genetic variation among these 19 populations. High levels of genetic diversity were observed throughout the 19 E. urophylla populations based on genome-wide SNP data (HE=0.2677 to 0.3487). Analysis with STRUCTURE software, Principal component analysis (PCA) and a neighbor-joining (NJ) tree indicated that E. urophylla populations could be divided into three groups, and moderate and weak population structure was observed with pairwise genetic differentiation (FST) values ranging from −0.09 to 0.074. The low genetic diversity and shallow genetic differentiation found within the 19 populations may be a consequence of their pollination system and seed dispersal mechanism. In addition, 55 core germplasms of E. urophylla were constructed according to the genetic marker data. The genome-wide SNPs we identified will provide a valuable resource for further genetic improvement and effective use of the germplasm resources.

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Project description:In order to study the effect of polyploidization on gene expression in the leaves of Eucalyptus urophylla, triploid obtained by sexual polyploidization and its diploid control were used as materials, and leaves at different growth stages of different ploidies were collected for transcriptome sequencing.

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