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ABSTRACT: Acetyl-CoA carboxylase overexpression in herbicide resistant Digitaria sanguinalis

PROVIDER: PRJNA392316 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR5766353_1.fastq.gz	Fastqsanger.gz
	SRR5766353_2.fastq.gz	Fastqsanger.gz
	SRR5766354_1.fastq.gz	Fastqsanger.gz
	SRR5766354_2.fastq.gz	Fastqsanger.gz
	SRR5766355_1.fastq.gz	Fastqsanger.gz

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Transcriptome analysis indicates the involvement of herbicide-responsive and plant–pathogen interaction pathways in the development of resistance to ACCase inhibitors in Apera spica-venti

Project description:Background: The continuous use of the herbicides contributes to the emergence of the resistant populations of numerous weed species that are tolerant to multiple herbicides with different modes of action (multiple resistance) which is provided by non-target-site resistance mechanisms. In this study, we addressed the question of rapid acquisition of herbicide resistance to pinoxaden (acetyl CoA carboxylase inhibitor) in Apera spica-venti, which endangers winter cereal crops and has high adaptation capabilities to inhabit many rural locations. To this end, de novo transcriptome of Apera spica-venti was assembled and RNA-sequencing analysis of plants resistant and susceptible to pinoxaden treated with this herbicide was performed. Results: The obtained data showed that the prime candidate genes responsible for herbicide resistance were those encoding 3-ketoacyl-CoA synthase 12-like, UDP-glycosyltransferases (UGT) including UGT75K6, UGT75E2, UGT83A1-like, and glutathione S-transferases (GSTs) such as GSTU1 and GSTU6. Also, such highly accelerated herbicide resistance emergence may result from the enhanced constitutive expression of a wide range of genes involved in detoxification already before herbicide treatment and may also influence response to biotic stresses, which was assumed by the detection of expression changes in genes encoding defence-related proteins, including receptor kinase-like Xa21. Moreover, alterations in the expression of genes associated with methylation in non-treated herbicide-resistant populations were identified. Conclusion: The obtained results indicated genes that may be involved in herbicide resistance. Moreover, they provide valuable insight into the possible effect of resistance on the weed interaction with the other stresses by indicating pathways associated with both abiotic and biotic stresses.

2023-04-22 | GSE204857 | GEO

Transcriptome analysis indicates the involvement of herbicide-responsive and plant-pathogen interaction pathways in the development of resistance to ACCase inhibitors in Apera spica-venti

2023-04-22 | GSE204788 | GEO

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Project description:Digitaria sanguinalis

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Project description:Digitaria sanguinalis overview

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Histone modification (H3, H3K9ac, H3K9me2) ChIP-seq in Pcut6MUT strain of Schizosaccharomyces pombe

Project description:Acetylation and dimethylation of lysine 9 on histone H3 are prominent marks of euchromatin and heterochromatin, respectively. Moreover, histone acetylation has been linked to lipid metabolism. Cut6, the acetyl-CoA carboxylase, is one of direct targets of Cbf11 which we have previously identified as a regulator of lipid metabolism. Here we have performed ChIP-seq of H3K9ac, H3K9me2 and H3 in Pcut6MUT strain (promoter mutant of cut6 with abolished Cbf11 binding) of Schizosaccharomyces pombe in three biological replicates. Strain genotypes: cut6 promoter mutant MP636 (h- Pcut6MUT).

2023-05-24 | E-MTAB-11082 | biostudies-arrayexpress

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Project description:Acetylation and dimethylation of lysine 9 on histone H3 are prominent marks of euchromatin and heterochromatin, respectively. Moreover, histone acetylation has been linked to lipid metabolism. We have previously identified the transcription factor Cbf11 as a regulator of lipid metabolism and genome integrity in the fission yeast. Cut6, the acetyl-CoA carboxylase, is one of direct targets of Cbf11. To link the role of Cbf11 in lipid metabolism and chromatin regulation we have performed ChIP-seq of H3K9ac, H3K9me2 and H3 in WT and cbf11KO strains of Schizosaccharomyces pombe in three biological replicates. Strain genotypes: wild type JB32 (h+s); cbf11 knock-out MP44 (h+ cbf11::natR).

2021-11-03 | E-MTAB-11081 | biostudies-arrayexpress

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