Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gallus gallus

ABSTRACT: RNA-seq of chicken small yellow follicles with different FSHR expression level

PROVIDER: PRJNA392469 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5786000_1.fastq.gz	Fastqsanger.gz
	SRR5786000_2.fastq.gz	Fastqsanger.gz
	SRR5786001_1.fastq.gz	Fastqsanger.gz
	SRR5786001_2.fastq.gz	Fastqsanger.gz
	SRR5786002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

RNA-seq of chicken small yellow follicles with different FSHR expression level

Project description:The aim of study was to identify the differentially expressed genes in SYF by using Illumina RNA deep sequencing, one SYF has the highest expression level of FSHR, the other has the lowest expression level of FSHR. We sampled six follicles from three chickens.In order to discover the key genes that regulate the process of follicle selection. From RNA-seq results, we got 26.63G reads,when mapping the reads to chicken genome, 75.13%-78.40% reads were successfully mapped, and more than 98% reads were unique.and we found 1382 new genes,functional annotation of the new gene was also performed.

2017-12-06 | GSE100673 | GEO

Project description:chicken small yellow follicles sequencing

| PRJNA1080244 | ENA

snRNA-seq of chicken (Gallus gallus) adult testis

Project description:Single-nucleus RNA sequencing (snRNA-seq) was used to profile the transcriptome of 8,413 nuclei in chicken adult testis. This dataset includes two samples from two different individuals. This dataset is part of a larger evolutionary study of adult testis at the single-nucleus level (97,521 single-nuclei in total) across mammals including 10 representatives of the three main mammalian lineages: human, chimpanzee, bonobo, gorilla, gibbon, rhesus macaque, marmoset, mouse (placental mammals); grey short-tailed opossum (marsupials); and platypus (egg-laying monotremes). Corresponding data were generated for a bird (red junglefowl, the progenitor of domestic chicken), to be used as an evolutionary outgroup.

2021-11-08 | E-MTAB-11073 | biostudies-arrayexpress

Acute heat stress induces differential gene expressions in the small yellow follicles of a broiler-type strain of Taiwan country chickens

Project description:To realize the gene expression in response to acute heat stress in chicken small yellow follicles, we have employed whole genome microarray expression profiling as we have employed whole genome microarray expression profiling as a tool to identify genes response to acute heat stress. Female B strain Taiwan country chickens were subjected to acute heat stress (38℃) for 2 h, and then exposed to 25℃, with small yellow follicles collected 0, 2, and 6 h after the cessation of heat stress, using non heat-stressed hens as a control group (n = 3 hens per group). Based on a chicken 44K oligo microarray, 69, 51, and 76 genes were upregulated and 58, 15, 56 genes were downregulated after heat treatment of H2R0, H2R2, and H2R6, respectively, using a cutoff value of two-fold or higher in the small yellow follicles of the heat-stressed chickens from those of the control chickens. Upregulation of heat shock protein 25, interleukin 6, metallopeptidase 1, and metalloproteinase 13, and downregulation of type II alpha 1 collagen, discoidin domain receptor tyrosine kinase 2, and Kruppel-like factor 2 were confirmed through quantitative real-time polymerase chain reaction (qRT-PCR).

2015-07-21 | GSE71091 | GEO

Acute heat stress induces differential gene expressions in the small yellow follicles of a layer-type strain of Taiwan country chickens

2017-05-20 | GSE99108 | GEO

Dynamic gene expression atlas of goose granulosa cells during development stage

Project description:the nine developmental stage, including small white follicles (SWF), large white follicles (LWF), small yellow follicles (SYF), large yellow follicles (LYF), the fifth largest follicle (F5), fourth largest follicle (F4), third largest follicle (F3), second largest follicle (F2) and the largest follicle (F1), respectively.

2019-10-16 | GSE133770 | GEO

Gallus gallus

Project description:chicken gonad small RNA sequencing

| PRJNA321374 | ENA

Gallus gallus

Project description:chicken testis and sperm small RNA sequencing

| PRJNA321444 | ENA

Gallus gallus

Project description:miRNA Transcriptome of Tibetan chicken and Pengxian yellow chicken

| PRJNA655375 | ENA

Chicken (Gallus gallus) Transcriptome of Intestinal, Immune, and Reproductive Cell and Tissue Types

Project description:We report the transcriptomes of 10 different chicken (Gallus gallus) cell/tissue types. The goal of this project was to determine similarities and differences between different cell/tissue types, with respect to protein coding genes, lncRNA, isoform counts, and differential gene expression. We provide raw data and bigWig files for UCSC visualization. The findings described here will be useful towards a complete annotation of chicken tissue and cellular transcriptomes.

2021-04-26 | GSE166257 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data