Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome

ABSTRACT: Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome

PROVIDER: PRJNA392814 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5796930.fastq.gz	Fastqsanger.gz
	SRR5796940.fastq.gz	Fastqsanger.gz
	SRR5796950.fastq.gz	Fastqsanger.gz
	SRR5796931.fastq.gz	Fastqsanger.gz
	SRR5796941.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 32

Similar Datasets

Rice RNA secondary structurome under heat stress

Project description:We used the Structure-seq2 protocol and applied it to 14-day-old rice (Oryza sativa) shoot tissue for genome-wide RNA structure probing to investigate the effect of heat stress on the RNA structurome.

2018-11-12 | GSE100714 | GEO

Genome-wide analysis of heat effect on rice transcriptome and RNA secondary structurome

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-11-12 | GSE100715 | GEO

Genome-wide analysis of heat effect on rice transcriptome by RNA-seq

Project description:To impose the heat treatment similar to the Structure-seq experiment, we applied RNA-seq to 14-day-old rice (Oryza sativa) shoot tissue to investigate the effect of heat stress (42°C) as compared to control condition (22°C).

2018-11-12 | GSE100713 | GEO

Oryza sativa

Project description:Rice RNA secondary structurome under heat stress

| PRJNA392817 | ENA

Ribosome profiling analysis of heat effect on rice

Project description:To impose the heat treatment similar to the Structure-seq experiment, we applied Ribo-seq to 14-day-old rice (Oryza sativa) shoot tissue to investigate the effect of heat stress (42°C) as compared to control condition (22°C).

2018-11-12 | GSE102216 | GEO

Transcriptome dynamics of rice spikelets under heat stress treatment

Project description:Rice reproductive development is highly sensitive to high temperature stress. In rice flowering occurs over a period of at least 5 days. Heat stress alters the global gene expression dynamics in panicle especially during pollen development, anthesis and grain filling. Some of the rice genotypes like Nagina 22 show better spikelet fertility and grain filling compared to high yielding and popular rice cultivars like IR 64. We carried out microarray analysis of 8 days heat stressed panicles of Nagina22, heat and drought tolerant aus rice cultivar and IR64, a heat susceptible indica genotype along with unstressed samples of Nagina22 and IR64 so as to understand the transcriptome dynamics in these two genotypes under heat stress and to identify the genes important for governing heat stress tolerance in rice.

2021-01-31 | GSE136746 | GEO

Expression data from panicle in heat tolerant and heat susceptible rice under high temperature stress

Project description:To better understand the mechanisms that regulate the heat stress response in rice, we conducted a comparative analysis of transcriptome profile in panicles from two rice lines, heat-tolerant line 252 (HTL252) and heat-susceptible line 082 (HSL082) using rice Affymetrix GeneChip. In HTL252 panicles, 1538 differentially expressed genes (DEGs) genes with at least four-fold expression changes compared with the control under heat treatment were considered heat-responsive (HR). Of these DEGs, 522 genes were up-regulated while 1016 genes were repressed. Among DEGs in HSL082, 496 genes were induced and 1707 genes were repressed. Out of the 370 common DEGs found between HTL252 and HSL082, 129 genes were induced and 241 genes were repressed.

2019-06-20 | GSE83542 | GEO

Expression data for heat shock in rice seedlings

Project description:In this study, we have analyzed the expression profiles of rice genes under control and heat shock conditions using microarray technology to identify the genes differentially expressed. Keywords: Heat shock

2009-01-08 | GSE14275 | GEO

The effects of various levels of drought and heat on the rice shoot transcriptome

Project description:To investigate the relative effects of drought and heat on the rice (Oryza sativa) transcriptome, we subjected rice seedlings to 3 levels of long-term drought or 2 levels of short-term heat stock

2022-12-27 | GSE221542 | GEO

Tissue-specific structurome changes in the RNA structurome mediate salt salinity response in Arabidopsis

Project description:We employed Structure-seq2 method to probe RNA structure genome-wide in Arabidopsis shoot and root tissue separately and investigate the effect of salt stress on the RNA structurome in vivo.

2020-01-29 | GSE124866 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data