Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Amycolatopsis thailandensis strain:JCM 16380

ABSTRACT: Amycolatopsis thailandensis strain:JCM 16380 Genome sequencing and assembly

PROVIDER: PRJNA392991 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	NMQT01.dat.gz	Other
	NMQT01.fasta.gz	Fasta.gz
	NMQT01.master.dat	Other
	NMQT01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Genomic features and virulence characteristics of a rare Burkholderia thailandensis strain causing human infection

Project description:Introduction. Burkholderia thailandensis is a clinically rare opportunistic pathogen in the genus Burkholderia, and the genomic features and virulence characteristics of B. thailandensis strains that cause human infection remain unclear.Gap Statement. B. thailandensis strains with different virulence induce different host innate immune responses in vitro.Aim. This work aimed to understand the sequence diversity, phylogenetic relationship, and virulence of B. thailandensis BPM causing human infection.Methodology. The comparative molecular and genomic analyses, and mouse infection studies were applied to analyse the virulence and genomic features of B. thailandensis BPM originating from China.Results. The whole genome sequence analysis showed that the genomes of BPM and other avirulent B. thailandensis strains were broadly similar, comprising two highly syntenic chromosomes with comparable numbers of coding regions (CDs), protein family distributions, and horizontally acquired genomic islands. By examining species-specific genomic regions, we obtained molecular explanations for previously known differences in virulence and discovered the potential specific virulence-associated genes of BPM, which likely work together to confer the virulence of BPM. Significantly reduced LD50 and survival rates during mouse infection experiments were found in BPM compared to the avirulent B. thailandensis E264 (BtE264).Conclusion. Taken together, the results of this study provide basic information on the genomic features and virulence characteristics of the virulent B. thailandensis strain BPM, which is helpful for understanding its evolution as it relates to pathogenesis and environmental adaptability.

2021-02-15 | GSE147369 | GEO

Lacticaseibacillus thailandensis DSM 22698 = JCM 13996

Project description:Genome sequencing of Lactobacillus thailandensis JCM 13996

| PRJDB898 | ENA

transcriptome of Amycolatopsis mediterranei U32 in the Bennet medium with or without nitrate

Project description:We reported transcriptome profiles of rifamycin SV-produced strain Amycolatopsis mediterranei U32 in the Bennet medium with or without 80 mM nitrate in different cultivation stage. By comparative analysis of genome-wide gene expression in these conditions, we found that the mechanism of high production of rifamycin SV induced by nitrate could be elucidated.

2015-07-01 | GSE63313 | GEO

B. thailandensis genes induced by subinhibitory concentration of glyphosate

Project description:Total transcript amplification (TTA) from single eukaryotic cells for transcriptome analysis is established, but TTA from a single prokaryotic cell presents additional challenges with much less starting material and lack of poly(A)-tails. We described, here, a novel method for single bacterium TTA, using a Burkholderia thailandensis model exposed to subinhibitory concentration of the antibacterial agent, glyphosate. Utilizing B. thialandensis microarray to assess the TTA method showed little gene bias (< 2 fold-change) and absence (~5-6%) when compared to the larger scale non-amplified RNA samples. B. thailandensis genes important to possibly recuperate and balance the intracellular amino acid pool were induced (or repressed) by the aromatic amino acid biosynthesis inhibitor, glyphosate. We validated our single-cell microarray data at the multi-cells and single-cell levels with lacZ and gfp reporter-gene fusions, respectively. This novel method will rejuvenate and expand the prokaryotic transcriptomic field. Two identical cultures of B. thailandensis wildtype strain E264 were grown in 1x M9 minimal medium supplemented with 1% Brij-58 and 20 mM glucose (MG) to mid-log phase. One culture was induced by final concentration of 0.01% (w/v) glyphosate for 30 minutes. Total RNA was then purified from B. thailandensis uninduced and induced samples, converted to cDNA and hybridized onto B. thailandensis 70mer triplicate array

2010-08-05 | E-GEOD-23419 | biostudies-arrayexpress

transcriptome of Amycolatopsis mediterranei U32 in the Bennet medium with or without nitrate

2015-07-01 | E-GEOD-63313 | biostudies-arrayexpress

Proteomic analysis reveals metabolic versatility of Amycolatopsis sp. BX17: a strain native from milpa agroecosystem soil

Project description:Amycolatopsis sp. BX17 is an actinobacterium isolated from milpa soils that antagonizes the phytopathogenic fungus Fusarium graminearum. Metabolites secreted by the actinobacterium cultured in medium without glucose inhibited 100% the mycelial growth of F. graminearum RH1, while in medium supplemented with 20 g/L of glucose inhibition was 65%. With the aim of studying how the metabolism of strain BX17 is modulated by glucose, as the main carbon source, media with 0 and 20 g/L glucose were selected to analyze the intracellular proteins by quantitative label-free proteomic analysis.

2022-02-14 | PXD028644 | Pride

Burkholderia thailandensis strain:29713

Project description:Burkholderia thailandensis strain:29713 Genome sequencing and assembly

| PRJNA872896 | ENA

Burkholderia thailandensis strain:29711

Project description:Burkholderia thailandensis strain:29711 Genome sequencing and assembly

| PRJNA872938 | ENA

Burkholderia thailandensis strain:2.1

Project description:Burkholderia thailandensis strain:2.1 Genome sequencing and assembly

| PRJNA419856 | ENA

Burkholderia thailandensis strain:E067

Project description:Burkholderia thailandensis strain:E067 Genome sequencing and assembly