Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bacterium

ABSTRACT: bacterium Genome sequencing and assembly

PROVIDER: PRJNA393885 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	NMRG01.dat.gz	Other
	NMRG01.fasta.gz	Fasta.gz
	NMRG01.master.dat	Other
	NMRH01.dat.gz	Other

Items per page:

1 - 5 of 121

Similar Datasets

tRNAs quantification by hydro-tRNA-seq in the genome-reduced bacterium Mycoplasma pneumoniae

Project description:We measured abundances of tRNAs by means of hydro-tRNA-seq (Gogakos et al., 2017), a method based on partial alkaline RNA hydrolysis that generates fragments suitable for sequencing, in the genome-reduced bacterium Mycoplasma pneumoniae.

2023-06-29 | E-MTAB-11930 | biostudies-arrayexpress

bacterium

Project description:bacterium Genome sequencing and assembly

| PRJNA699703 | ENA

bacterium

Project description:bacterium Genome sequencing and assembly

| PRJNA724799 | ENA

bacterium

Project description:bacterium Genome sequencing and assembly

| PRJNA418895 | ENA

N-terminal-oriented proteogenomics for the marine bacterium Roseobacter denitrificans

Project description:Given the facilities for whole genome sequencing with next-generation sequencers, structural and functional gene annotation is now only based on automated prediction. However, errors in terms of gene structure are still frequently reported especially for the correct determination of initiation start codons. Here, we propose a strategy to enrich and detect protein N-termini by mass spectrometry in order to refine genome annotation. After selective protein N-termini derivatization using (N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPPAc-OSu) as labeling reagent, protein digestion was performed with three proteases in parallel. TMPP-labeled N-terminal-most peptides were further resolved from internal peptides by the COmbined FRActional DIagonal Chromatography (COFRADIC) sorting methodology before analysis with tandem mass spectrometry. We refined the annotation of the genome of a model marine bacterium, Roseobacter denitrificans.

2014-02-19 | PXD000337 | Pride

Rhodobacterales bacterium

Project description:Rhodobacterales bacterium Genome sequencing and assembly

| PRJNA770146 | ENA

uncultured bacterium

Project description:uncultured bacterium Genome sequencing and assembly

| PRJNA348165 | ENA

Chloroflexota bacterium

Project description:Chloroflexota bacterium Genome sequencing and assembly

| PRJNA579290 | ENA

Chloroflexota bacterium

Project description:Chloroflexota bacterium Genome sequencing and assembly