Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: mRNA sequencing of larval zebrafish heart tissue

PROVIDER: PRJNA395216 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5855250_1.fastq.gz	Fastqsanger.gz
	SRR5855250_2.fastq.gz	Fastqsanger.gz
	SRR5855251_1.fastq.gz	Fastqsanger.gz
	SRR5855251_2.fastq.gz	Fastqsanger.gz
	SRR5855252_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Danio rerio

Project description:Zebrafish heart regeneration

| PRJNA1058587 | ENA

Danio rerio

Project description:Zebrafish heart regeneration

| PRJNA355135 | ENA

Danio rerio

Project description:Zebrafish heart regeneration

| PRJNA119275 | ENA

Calsequestrins in skeletal and cardiac muscle from adult Danio rerio.

Project description:All vertebrates have multiple genes encoding for different CASQ isoforms. Increasing interest has been focused on mammalian and human CASQ genes since mutations of both cardiac (CASQ2) and skeletal (CASQ1) isoforms cause different, and sometime severe, human pathologies Danio rerio (zebrafish) is a powerful model for studying function and mutations of human proteins. In this work expression, biochemical properties and cellular and sub-cellular localization of Danio rerio native CASQ isoforms are investigated. By quantitative PCR three mRNAs were detected in skeletal muscle and one mRNA in heart. Three zebrafish CASQs were identified by mass spectrometry and they share properties with mammalian skeletal and cardiac CASQs. Skeletal calsequestrins were found primarily, but not exclusively, at the sarcomere Z-line level where Terminal Cisternae of Sarcoplasmic reticulum are located.

2015-11-10 | PXD002455 | Pride

Danio rerio

Project description:Zebrafish Hypoxia study Heart array

| PRJNA95495 | ENA

Danio rerio

Project description:Epigenetical regulation in zebrafish heart regeneration

| PRJNA386461 | ENA

Danio rerio

Project description:Telomerase is essential for zebrafish heart regeneration

| PRJNA292013 | ENA

Danio rerio

Project description:MicroRNA expression profiling of zebrafish heart regeneration

| PRJNA300558 | ENA

Danio rerio

Project description:mRNA sequencing analysis of zebrafish embryos, Dcp2 inhibition

| PRJNA377902 | ENA

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data