Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: The response of bacteria, archaea to amendments in cadmium-contaminated paddy filed in southwestern China

PROVIDER: PRJNA396262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5879890.fastq.gz	Fastqsanger.gz
	SRR5879900.fastq.gz	Fastqsanger.gz
	SRR5879910.fastq.gz	Fastqsanger.gz
	SRR5879920.fastq.gz	Fastqsanger.gz
	SRR5879891.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

Project description:Cadmium contaminated paddy soil 16S sequencing (2021)

| PRJNA974971 | ENA

Project description:Virus-host bacteria interaction with organic amendments in paddy soil

| PRJNA1188636 | ENA

Intestinal microbiome cohort study of colorectal cancer

Project description:Interventions: ntestinal polyp gruop and colorectal cancer gruop:Nil Primary outcome(s): bacteria;fungi;archaea;virus Study Design: Factorial

| 2704346 | ecrin-mdr-crc

Effect of pH on Cadmium Toxicity in Escherichia coli

Project description:Metals at high concentrations can exert toxic effects on microorganisms. It has been widely reported that lowering environmental pH reduces effects of cadmium toxicity in bacteria. Understanding the effects of pH-mediated cadmium toxicity on bacteria would be useful for minimizing cadmium toxicity in the environment and gaining insight into the interactions between organic and inorganic components of life. Growth curve analysis confirmed that cadmium was less toxic to Escherichia coli at pH 5 than at pH 7 in M9 minimal salts medium. To better understand the cellular mechanisms by which lowering pH decreases cadmium toxicity, we used DNA microarrays to characterize global gene expression patterns in E. coli in response to cadmium exposure at moderately acidic (5) and neutral (7) values of pH. Higher expression of several stress response genes including hdeA, otsA, and yjbJ at pH 5 after only 5 minutes was observed and may suggest that acidic pH more rapidly induces genes that confer cadmium resistance. Genes involved in transport were more highly expressed at pH 7 than at pH 5 in the presence of cadmium. Of the genes that showed an interaction between pH and cadmium effects, 46% encoded hypothetical proteins, which may have novel functions involved in mitigating cadmium toxicity.

2008-08-21 | GSE12373 | GEO

soil metagenome

Project description:rice paddy metagenomes, bacteria and archaea Genome sequencing

| PRJNA355182 | ENA

Project description:18S_Lake Qionghai, southwestern China

| PRJNA666278 | ENA

Project description:16S_Lake Qionghai, southwestern China

| PRJNA666325 | ENA

Project description:16S_Lake Erhai, southwestern China

| PRJNA666501 | ENA

Project description:18S_Lake Erhai, southwestern China

| PRJNA666494 | ENA

Proteomics of Gammarus pulex individual females sampled from the wild

Project description:Next-generation proteomics of Gammarus pulex females for characterizing the potential proteome divergence induced in one site by natural bioavailable mono-metallic contamination (cadmium) compared to a non-contaminated site.

2019-07-30 | PXD013712 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data