Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Allium sativum

ABSTRACT: Transcriptome-based association study reveals a regulatory network for the shape of garlic clove

PROVIDER: PRJNA396885 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5889480_1.fastq.gz	Fastqsanger.gz
	SRR5889480_2.fastq.gz	Fastqsanger.gz
	SRR5889490_1.fastq.gz	Fastqsanger.gz
	SRR5889490_2.fastq.gz	Fastqsanger.gz
	SRR5889500_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 204

Similar Datasets

Transcriptome-based association study reveals a regulatory network for the shape of garlic clove

Project description:A total of 102 garlic accession were performed for mRNA sequencing, and then were used for scoring the variations in both gene sequence (SNPs) and expression (GE) in this population. Thereafter, SNPs and GE are used for carrying out association analysis with the phenotype of shape of garlic clove, respectively, which comes to a joint decision for the candidate genes that are involved in trait. In addition, SNPs and GE data is used as genotype and phenotype, respectively, for performing eQTL analysis to ascertain the interaction among trait-controlled genes, which finally brings a regulatory network for the shape of garlic clove.

2017-10-01 | GSE102157 | GEO

Allium sativum

Project description:Comparative transcriptome analysis of purple blotch resistant and susceptible cultivars of garlic (Allium sativum L.)

| PRJNA987033 | ENA

Allium sativum

Project description:Member of Liliaceae family, garlic has known medicinal properties and is used as a condiment

| PRJNA168122 | ENA

Allium

Project description:Comparative study of repeats in onion, garlic, and wild garlic

| PRJNA512235 | ENA

Allium sativum cultivar:Jinxianghongsuan

Project description:Comparative analysis of two species of garlic seedlings: qualities and transcriptional landscape

| PRJNA797535 | ENA

Allium sativum cultivar:Snow Mountain Garlic

Project description:Allium sativum cultivar:Snow Mountain Garlic Transcriptome or Gene expression

| PRJNA489986 | ENA

Comparative Dissection of Three Giant Genomes: Allium cepa, Allium sativum, and Allium ursinum.

Project description:Knowledge of the fascinating world of DNA repeats is continuously being enriched by newly identified elements and their hypothetical or well-established biological relevance. Genomic approaches can be used for comparative studies of major repeats in any group of genomes, regardless of their size and complexity. Such studies are particularly fruitful in large genomes, and useful mainly in crop plants where they provide a rich source of molecular markers or information on indispensable genomic components (e.g., telomeres, centromeres, or ribosomal RNA genes). Surprisingly, in Allium species, a comprehensive comparative study of repeats is lacking. Here we provide such a study of two economically important species, Allium cepa (onion), and A. sativum (garlic), and their distantly related A. ursinum (wild garlic). We present an overview and classification of major repeats in these species and have paid specific attention to sequence conservation and copy numbers of major representatives in each type of repeat, including retrotransposons, rDNA, or newly identified satellite sequences. Prevailing repeats in all three studied species belonged to Ty3/gypsy elements, however they significantly diverged and we did not detect them in common clusters in comparative analysis. Actually, only a low number of clusters was shared by all three species. Such conserved repeats were for example 5S and 45S rDNA genes and surprisingly a specific and quite rare Ty1/copia lineage. Species-specific long satellites were found mainly in A. cepa and A. sativum. We also show in situ localization of selected repeats that could potentially be applicable as chromosomal markers, e.g., in interspecific breeding.

| S-EPMC6387171 | biostudies-literature

Allium sativum cultivar:Yamuna Safed-3 (G-282)

Project description:RNA Seq of Garlic Yamuna Safed-3 (G-282): Leaf sample

| PRJNA650020 | ENA

Allium sativum

Project description:map

| PRJNA177851 | ENA

Allium sativum

Project description:Allium sativum Transcriptome or Gene expression

| PRJNA961699 | ENA