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Mus musculus

ABSTRACT: Single cell RNA Seq data of BMDM from mouse infected with Salmonella [dilution]

OTHER RELATED OMICS DATASETS IN: GSE104678GSE102163

PROVIDER: PRJNA396892 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR5890130.fastq.gz	Fastqsanger.gz
	SRR5890140.fastq.gz	Fastqsanger.gz
	SRR5890131.fastq.gz	Fastqsanger.gz
	SRR5890141.fastq.gz	Fastqsanger.gz
	SRR5890132.fastq.gz	Fastqsanger.gz

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Mus musculus

Project description:Single cell RNA Seq data of BMDM from mouse infected with Salmonella [hundred_ten_singles]

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Mus musculus

Project description:Single cell RNA Seq data of BMDM from mouse infected with Salmonella [full time course]

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Single cell RNA Seq data of BMDM from mouse infected with Salmonella [dilution CEL-Seq2]

Project description:Single cell RNA Seq data of BMDM from mouse infected with Salmonella [dilution CEL-Seq2]

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Single cell RNA Seq data of BMDM from mouse infected with Salmonella

Project description:Single cell RNA Seq data of BMDM from mouse infected with Salmonella

| PRJNA396889 | ENA

Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344

Project description:Single cell RNA Seq data of BMDM from mouse infected with Salmonella [stat log]

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snRNA-seq of mouse (Mus musculus) adult testis

Project description:Single-nucleus RNA sequencing (snRNA-seq) was used to profile the transcriptome of 5,264 nuclei in mouse adult testis. This dataset includes two samples from two different individuals. This dataset is part of a larger evolutionary study of adult testis at the single-nucleus level (97,521 single-nuclei in total) across mammals including 10 representatives of the three main mammalian lineages: human, chimpanzee, bonobo, gorilla, gibbon, rhesus macaque, marmoset, mouse (placental mammals); grey short-tailed opossum (marsupials); and platypus (egg-laying monotremes). Corresponding data were generated for a bird (red junglefowl, the progenitor of domestic chicken), to be used as an evolutionary outgroup.

2021-11-08 | E-MTAB-11071 | biostudies-arrayexpress

Bidirectional Introgression between Mus musculus domesticus and Mus spretus.

Project description:Introgressed variants from other species can be an important source of genetic variation because they may arise rapidly, can include multiple mutations on a single haplotype, and have often been pretested by selection in the species of origin. Although introgressed alleles are generally deleterious, several studies have reported introgression as the source of adaptive alleles-including the rodenticide-resistant variant of Vkorc1 that introgressed from Mus spretus into European populations of Mus musculus domesticus. Here, we conducted bidirectional genome scans to characterize introgressed regions into one wild population of M. spretus from Spain and three wild populations of M. m. domesticus from France, Germany, and Iran. Despite the fact that these species show considerable intrinsic postzygotic reproductive isolation, introgression was observed in all individuals, including in the M. musculus reference genome (GRCm38). Mus spretus individuals had a greater proportion of introgression compared with M. m. domesticus, and within M. m. domesticus, the proportion of introgression decreased with geographic distance from the area of sympatry. Introgression was observed on all autosomes for both species, but not on the X-chromosome in M. m. domesticus, consistent with known X-linked hybrid sterility and inviability genes that have been mapped to the M. spretus X-chromosome. Tract lengths were generally short with a few outliers of up to 2.7 Mb. Interestingly, the longest introgressed tracts were in olfactory receptor regions, and introgressed tracts were significantly enriched for olfactory receptor genes in both species, suggesting that introgression may be a source of functional novelty even between species with high barriers to gene flow.

| S-EPMC8784167 | biostudies-literature

RNA-seq of Danio rerio and Mus musculus skin for three different age groups

Project description:Background: Comparison of temporal gene expression profiles. The RNA-seq data comprises 3 age groups: 2, 15 and 30 months for mouse skin; 5, 24 and 42 months for zebrafish skin. Illumina 50bp single-stranded single-read RNA sequencing Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de)

2015-12-01 | GSE46916 | GEO

Mus musculus strain:C57BL/6

Project description:RNA-seq data from mouse BMDMs infected with Salmonella enterica serovar Typhimurium

| PRJNA975736 | ENA

Mus musculus cornea experiment

Project description:PURPOSE: To provide a detailed gene expression profile of the normal postnatal mouse cornea. METHODS: Serial analysis of gene expression (SAGE) was performed on postnatal day (PN)9 and adult mouse (6 week) total corneas. The expression of selected genes was analyzed by in situ hybridization. RESULTS: A total of 64,272 PN9 and 62,206 adult tags were sequenced. Mouse corneal transcriptomes are composed of at least 19,544 and 18,509 unique mRNAs, respectively. One third of the unique tags were expressed at both stages, whereas a third was identified exclusively in PN9 or adult corneas. Three hundred thirty-four PN9 and 339 adult tags were enriched more than fivefold over other published nonocular libraries. Abundant transcripts were associated with metabolic functions, redox activities, and barrier integrity. Three members of the Ly-6/uPAR family whose functions are unknown in the cornea constitute more than 1% of the total mRNA. Aquaporin 5, epithelial membrane protein and glutathione-S-transferase (GST) omega-1, and GST alpha-4 mRNAs were preferentially expressed in distinct corneal epithelial layers, providing new markers for stratification. More than 200 tags were differentially expressed, of which 25 mediate transcription. CONCLUSIONS: In addition to providing a detailed profile of expressed genes in the PN9 and mature mouse cornea, the present SAGE data demonstrate dynamic changes in gene expression after eye opening and provide new probes for exploring corneal epithelial cell stratification, development, and function and for exploring the intricate relationship between programmed and environmentally induced gene expression in the cornea. Keywords: other

2004-01-02 | GSE887 | GEO

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