Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mycobacteroides abscessus

ABSTRACT: Genome sequence and assembly of 123 Mycobacterium abscessus subsp. abscessus isolates and 39 Mycobacterium abscessus subsp. massiliense isolates

PROVIDER: PRJNA398137 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	NQOX01.dat.gz	Other
	NQOX01.fasta.gz	Fasta.gz
	NQOX01.master.dat	Other
	NQOY01.dat.gz	Other
	NQOY01.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 648

Similar Datasets

Mycobacterium abscessus

Project description:Genome sequence and assembly of 123 Mycobacterium abscessus subsp. abscessus isolates and 39 Mycobacterium abscessus subsp. massiliense isolates

| PRJNA398134 | ENA

New rapid scheme for distinguishing subspecies of the Mycobacterium abscessus group and identification of Mycobacterium massiliense with inducible clarithromycin resistance

Project description:Mycobacterium abscessus [M. abscessus (sensu lato) or M. abscessus group] comprises three closely related taxa with taxonomic status under revision: M. abscessus sensu stricto, M. bolletii and M. massiliense. We describe here a simple, robust and cost effective PCR-based method for distinguishing among M. abscessus, M. massiliense and bolletii. Based on the M. abscessus ATCC 19977T genome, discriminatory regions were identified between M. abscessus and M. massiliense from array-based comparative genomic hybridization. A typing scheme using PCR primers designed for four of these locations was applied to 46 well-characterized clinical isolates comprising 29 M. abscessus, 15 M. massiliense and 2 M. bolletii previously identified by multi-target sequencing. Interestingly, 2 isolates unequivocally identified as M. massiliense were shown to have a full length erm(41) instead of the expected gene deletion and showed inducible clarithromycin resistance after 14 days. We propose using this PCR-based typing scheme combined with erm(41) PCR for a straightforward identification of M. abscessus, M. massiliense and M. bolletii and assessment of inducible clarithromycin resistance. This method can be easily implemented into a routine workflow providing subspecies level identification within 24 hours of isolation of M. abscessus group. Two-color CGH with 4 independent Mycobacterium clinical isolates and the M massiliense type strain (CCUG 48898) labeled with Cy3 were cohybridized with the M abscessus type strain (ATCC 19977) labeled with Cy5 on a tiling array designed against the M abscessus type strain

2013-07-17 | E-GEOD-43629 | biostudies-arrayexpress

New rapid scheme for distinguishing subspecies of the Mycobacterium abscessus group and identification of Mycobacterium massiliense with inducible clarithromycin resistance

2013-07-17 | GSE43629 | GEO

Project description:Whole genome sequence of 123 Mycobacterium abscessus subsp. abscessus isolates and 39 Mycobacterium abscessus subsp. massiliense isolates.

| PRJEB22146 | ENA

Mycobacteroides abscessus subsp. abscessus

Project description:Mycobacterium abscessus subsp. abscessus re-sequencing

| PRJNA734909 | ENA

Mycobacteroides abscessus subsp. massiliense

Project description:Mycobacteroides abscessus subsp. massiliense genome resequencing

| PRJNA691364 | ENA

Mycobacteroides abscessus subsp. massiliense

Project description:Mycobacteroides abscessus subsp. massiliense Genome sequencing and assembly

| PRJNA672126 | ENA

Mycobacteroides abscessus

Project description:Genome analysis of the Mycobacterium abscessus clinical isolates

| PRJDB16220 | ENA

Mycobacteroides abscessus

Project description:In-host adaptation of clinical mycobacterium abscessus isolates

| PRJNA882917 | ENA

Mycobacterium abscessus complex isolates

Project description:Mycobacterium abscessus subsp. abscessusMycobacterium abscessus subsp. bolletiiMycobacterium abscessus subsp. massiliense Genome sequencing and assembly

| PRJNA832057 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data