Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RADseq for Quercus section Cyclobalanopsis

PROVIDER: PRJNA400129 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5984280.fastq.gz	Fastqsanger.gz
	SRR5984290.fastq.gz	Fastqsanger.gz
	SRR5984300.fastq.gz	Fastqsanger.gz
	SRR5984310.fastq.gz	Fastqsanger.gz
	SRR5984320.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Project description:RADseq for Quercus humboldtii (Fagaceae: Quercus)

| PRJNA926014 | ENA

Project description:RADseq for Quercus championii

| PRJNA482009 | ENA

Phylogeography of West Eurasian white oak plastome

Project description:Phylogeography of Quercus section Quercus Chloroplast DNA variation

| PRJEB61979 | ENA

Project description:RAD-seq data of Quercus section Ilex

| PRJNA1105429 | ENA

Project description:RADseq for oaks (Fagaceae: Quercus) from the Western Palearctic

| PRJNA890904 | ENA

Project description:RADseq raw sequences of Quercus acerifolia, Maple-leaf Oak

| PRJNA857491 | ENA

The transcriptome of Oak roots associated with truffles

Project description:Illumina HiSeq technology was used to generate mRNA profiles from mycorrhizal Quercus robur roots. Tuber melanosporum, T. aestivum and T.magnatum mycorrhizal root tips were harvested and used for RNA extraction. Paired-end reads of 100 bp were generated and aligned to Quercus robur CDS using CLC Genomics Workbench 9.

2018-07-01 | GSE97122 | GEO

Project description:RADseq for oaks (Fagaceae: Quercus) of the California Floristic Province

| PRJNA639507 | ENA

Decoding drought tolerance mechanisms in Holm oak (Quercus ilex) throught a combined transcriptomics and proteomics analysis

Project description:Transcript profiling of leaves from Quercus ilex seedlings subjected to well-watering and drought-stress (irrigation withdrawal) conditions

2020-04-03 | GSE145009 | GEO

RADseq for tumour mutation burden estimation and mutation signature analysis.

Project description:The utility of RADseq in an experimental setting is also demonstrated, based on our chasacterisation of an APOBEC mutation signature in an APOBEC3A transfected mouse cell line. 0D5 cells, derived from SSM3 cells, were co-transfected with a mixture containing pcDNA3.1 vectors expressing either APOBEC3A or APOBEC3B (kindly donated by Vincent Caval), pcDNA3.1 construct expressing deaminase null APOBEC3A linked to a uracil deglycosylase construct and a plasmid encoding mutant GFP and WT mCherry that is a reporter for APOBEC mutagenesis. Cells were grown, and gDNA extracted, prior to preparation of RADseq libraries using a PstI- MspI double-digest. Libraries underwent a Pippin Prep to select fragments in the size range of 220-520 bp (genomic sequence plus 148 bp of adapters). Single-end sequencing (1x101bp) was performed on an Illumina NovaSeq6000 utilizing v1.5 chemistry. Reads were aligned to mm10 using bwa mem and variants called using the GATK4 pipeline.

2023-06-30 | GSE234146 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data