Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sediment metagenome

ABSTRACT: Magnetotactic Bacteria Metagenome Project (MagMeta)

PROVIDER: PRJNA400260 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PDZS01.dat.gz	Other
	PDZS01.fasta.gz	Fasta.gz
	PDZS01.master.dat	Other
	PDZT01.dat.gz	Other
	PDZT01.fasta.gz	Fasta.gz

Items per page:

1 - 5 of 104

Similar Datasets

sediment metagenome

Project description:Magnetotactic bacteria of Bailonghu, Yaoquanhu, Yueyaopao (Wudalianchi, China)

| PRJNA786400 | ENA

uncultured magnetotactic bacterium

Project description:magnetotactic bacteria metagenome

| PRJNA377830 | ENA

freshwater sediment metagenome

Project description:The genetic basis of the species-specificity and morphological diversity of magnetotactic bacteria

| PRJNA657227 | ENA

Project description:Magnetotactic bacteria metagenomic assemblies

| PRJNA632036 | ENA

marine sediment metagenome

Project description:Marine Sediment bacteria Metagenome

| PRJNA279913 | ENA

marine sediment metagenome

Project description:Archaea and Bacteria Metagenome

| PRJNA678468 | ENA

sediment metagenome

Project description:1-13) bacteria 14-26) archaea. Metagenome

| PRJNA263971 | ENA

Identification of Arsenic Resistance Genes from Marine Sediment Metagenome.

Project description:A metagenomic library of sea sediment metagenome containing 245,000 recombinant clones representing ~ 2.45 Gb of sea sediment microbial DNA was constructed. Two unique arsenic resistance clones, A7 and A12, were identified by selection on sodium arsenite containing medium. Clone A7 showed a six-fold higher resistance to arsenate [As(V)], a three-fold higher resistance to arsenite [As(III)] and significantly increased resistance to antimony [Sb(III)], while clone A12 showed increased resistance only to sodium arsenite and not to the other two metalloids. The clones harbored inserts of 8.848 Kb and 6.771 Kb, respectively. Both the clones possess A + T rich nucleotide sequence with similarity to sequences from marine psychrophilic bacteria. Sequence and transposon-mutagenesis based analysis revealed the presence of a putative arsenate reductase (ArsC), a putative arsenite efflux pump (ArsB/ACR) and a putative NADPH-dependent FMN reductase (ArsH) in both the clones and also a putative transcriptional regulatory protein (ArsR) in pA7. The increased resistance of clone A7 to As(V), As(III) and Sb(III) indicates functional expression of ArsC and ArsB proteins from pA7. The absence of increased As(V) resistance in clone A12 may be due to the expression of a possible inactive ArsC, as conserved Arg60 residue in this protein was replaced by Glu60, while the absence of Sb(III) resistance may be due to the presence of an ACR3p-type arsenite pump, which is known to lack antimony transport ability.

| S-EPMC5574776 | biostudies-literature

aquatic metagenome

Project description:Amplicon analysis of the culture enriched for Magnetotactic bacteria

| PRJDB18594 | ENA

Identification of Iron-Inducible Genes in Magnetospirillum magneticum AMB-1 Non-Magnetic Mutant

Project description:Iron is limiting in the environment, bacteria respond to this deprivation by activating genes required for bacterial iron homeostasis. Transcriptional regulation in response to iron in Gram-negative bacteria is largely mediated by the ferric uptake regulator protein Fur, which in the presence of iron binds to a specific sequence in the promoter regions of genes under its control and acts as a repressor. Here we describe comparative global gene expression analysis using DNA microarray based on the whole genome sequence of the magnetotactic bacterium Magnetospirillum magneticum AMB-1 was conducted between wild type strain and a non-magnetic NMA61 mutant strain, generated by mini-Tn5 transposon mutagenesis which is incapable of assimilating iron to cytoplasm. No induction of the fur genes in NMA61 mutant strain was considered to be due to low intracellular iron concentration. In the iron-replete condition, among 4492 genes, 434 genes were down-regulated and 527 genes were up-regulated in the wild type strain. Among 434 genes down-regulated, 299 genes were not down-regulated in NMA61 mutant strain, indicating these genes are candidates of Fur-regulated. Keywords: Iron, magnetotactic bacteria

2007-07-07 | GSE5832 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data