Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fibrobacter succinogenes subsp. succinogenes S85

ABSTRACT: Fibrobacter succinogenes S85 glucose max G20-1 Transcriptome

PROVIDER: PRJNA402887 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6059824_1.fastq.gz	Fastqsanger.gz
	SRR6059824_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose max G20-2 Transcriptome

| PRJNA402888 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose max G20-3 Transcriptome

| PRJNA402889 | ENA

Generation and Characterization of Acid Tolerant Fibrobacter succinogenes S85

Project description:Microorganisms are key components for plant biomass breakdown within rumen environments. Gram negative Fibrobacter succinogenes have been identified as being active and dominant cellulolytic members of the rumen. In this study, F. succinogenes type strain S85 was adapted for steady state growth in continuous culture at pH 5.75 and confirmed to grow in the range of pH 5.60-5.65, which is lower than has been reported previously. RNA-seq analysis revealed 268 and 829 genes were differentially expressed at pH 6.1 and 5.65 compared to pH 6.7, respectively. Resequencing analysis identified seven single nucleotide polymorphisms (SNPs) in the sufD, yidE, xylE, rlmM, mscL and dosC genes of acid tolerant strains. Due to the absence of a F. succinogenes genetic system, homologues in Escherichia coli were mutated and complemented and the resulting strains were assayed for acid survival. Complementation with wild-type or acid tolerant F. succinogenes sufD restored the function of E. coli SufDSE, suggesting a possible role F. succinogenes sufD was involved in acid homeostasis. Recent genetic engineering developments need to be adapted and applied in F. succinogenes to further our understanding of this species.

2017-01-23 | GSE93907 | GEO

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 cellobiose max CB20-2 Transcriptome

| PRJNA402876 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 cellobiose max CB20-3 Transcriptome

| PRJNA402877 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 cellobiose max CB20-1 Transcriptome

| PRJNA402875 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose low G02-3 Transcriptome

| PRJNA402880 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose med G05-1 Transcriptome

| PRJNA402881 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose low G02-1 Transcriptome

| PRJNA402878 | ENA

Fibrobacter succinogenes subsp. succinogenes S85

Project description:Fibrobacter succinogenes S85 glucose low G02-2 Transcriptome

| PRJNA402879 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data