Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lobaria pulmonaria strain:Scotland

ABSTRACT: Lobaria pulmonaria Scotland Transcriptome

PROVIDER: PRJNA403314 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6048009_1.fastq.gz	Fastqsanger.gz
	SRR6048009_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Lobaria pulmonaria strain:Scotland

Project description:Lobaria pulmonaria Scotland Transcriptome

| PRJNA403071 | ENA

Lobaria pulmonaria strain:Scotland

Project description:Lobaria pulmonaria Scotland Standard Draft genome sequencing

| PRJNA346626 | ENA

Lobaria pulmonaria

Project description:Lobaria pulmonaria overview

| PRJNA403918 | ENA

Lobaria pulmonaria

Project description:Lobaria pulmonaria Transcriptome or Gene expression

| PRJNA811109 | ENA

Transcriptome profiling of lichen myco- and photobionts of Lobaria pulmobaria during ultraviolet-B exposure

Project description:We used raw RNA-Seq data from the lichen Lobaria pulmonaria to analyze changes in gene expression in response to ultraviolet-B (UV-B) treatment. The aim of the present work was to unravel the UV-B-induced defense response in the lichen Lobaria pulmonaria based on physiological traits and transcriptional profiling. Here we analyzed gene expression in mycobionts (Lobaria pulmonaria) and photobionts (Symbiochloris reticulata) after 80 min daily application of UV-B treatment of Lobaria pulmonaria thalli for two weeks. Special attention was paid to the UV-B-induced expression of the genes encoding stress tolerance proteins (heat shock proteins, antioxidants, etc.) and enzymes involved in the biosynthesis of photoprotective metabolites.

2024-09-03 | GSE228186 | GEO

Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont'

Project description:Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' Genome sequencing

| PRJNA275880 | ENA

The microbiome of the lichen Lobaria pulmonaria varies according to climate in Europe

Project description:The Lobaria pulmonaria holobiont consists of algal, fungal, cyanobacterial, and integrated diverse bacterial components and thrives in undisturbed, humid forests. We set out to investigate the role of the microbiome of L. pulmonaria in the adaptation of this ecologically sensitive lichen species to diverse climatic conditions. Our central hypothesis posited that microbiome composition and functionality aligns with continental-scale climatic parameters related to temperature and precipitation. In addition, we tested whether short-term weather dynamics, sampling season, and the genotypes of the fungal and algal partners influenced the variation in the lichen microbiome. Insights into compositional and functional changes within the microbiome were obtained using metaproteomics. Comparative examinations between Sub-Atlantic Lowland (SAL) and Alpine (ALP) regions unveiled the distinct impact of climate on microbiome functions.

2024-07-03 | PXD049079 | Pride

Melanins from the Lichens Lobaria pulmonaria and Lobaria retigera as Eco-Friendly Adsorbents of Synthetic Dyes.

Project description:Synthetic dyes are widely used in the industry; they are chemically stable, difficult to neutralize, and therefore they are a threat to the environment when released into wastewaters. The dyes have a significant impact on plant performance by impairing photosynthesis, inhibiting growth, and entering the food chain and may finally result in the toxicity, mutagenicity and carcinogenicity of food products. Implementation of the dark piment melanin for the adsorption of the synthetic dyes is a new ecologically friendly approach for bioremediation. The aim of the present work was to study the physico-chemical characteristics of melanins from the lichens Lobaria pulmonaria and Lobaria retigera, analyze their adsorption/desorption capacities towards synthetic dyes, and assess the capacity of melanins to mitigate toxicity of the dyes for a common soil bacterium Bacillus subtilis. Unique chelating properties of melanins determine the perspectives of the use of these high molecular weight polymers for detoxification of xenobiotics.

| S-EPMC9779828 | biostudies-literature

Characterization of microsatellite loci in the lichen fungus Lobaria pulmonaria (Lobariaceae).

Project description:Microsatellite loci were developed for the threatened haploid lichen fungus Lobaria pulmonaria to increase the resolution to identify clonal individuals, and to study its population subdivision. • We developed 14 microsatellite markers from 454 DNA sequencing data of L. pulmonaria and tested for cross-amplification with L. immixta and L. macaronesica. The number of alleles per locus ranged from two to 23. Nei's unbiased gene diversity, averaged over loci, ranged from 0.434 to 0.517 in the three studied populations. • The new markers will increase the genetic resolution in studies that aim at disentangling clones in L. pulmonaria and may be useful for closely related species within Lobaria sect. Lobaria.

| S-EPMC4105370 | biostudies-literature

lichen metagenome

Project description:Lichen associated microbial communities from Scotland - Lobaria pulmonaria GB1-07_RNA metatranscriptome

| PRJNA364453 | ENA