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Pectobacterium atrosepticum SCRI1043

ABSTRACT: Pectobacterium atrosepticum transcriptome profiling under in planta conditions

PROVIDER: PRJNA403794 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6023170.fastq.gz	Fastqsanger.gz
	SRR6023534.fastq.gz	Fastqsanger.gz
	SRR6023535.fastq.gz	Fastqsanger.gz
	SRR6023537.fastq.gz	Fastqsanger.gz
	SRR6023169.fastq.gz	Fastqsanger.gz

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Project description:Whole genome analysis of gene expression by Pectobacterium atrosepticum strain SCRI1043 wildtype and its relA, expI and rpoS deletion mutants when grown to exponential and stationary phase in PMB media. The data is further described in Bowden et al (2013) Virulence in Pectobacterium atrosepticum is regulated by a coincidence circuit involving quorum sensing and the stress alarmone, (p)ppGpp. Molecular Microbiology. DOI: 10.1111/mmi.12369 A 24 chip study using total RNA recovered from three separate wild-type cultures of Pectobacterium atrosepticum SCRI1043 and three separate cultures from three single mutant strains of SCRI1043 possessing deletions within relA (ECA3569), expI (ECA0105) or rpoS (ECA3530) when grown in Pel Minimal Broth (PMB) media to log-phase (6h) or early stationary phase (14h) growth. Each chip measures the expression level of 4,472 genes from Pectobacterium atrosepticum SCRI1043 with eight 60-mer probe pairs (PM/MM) per gene, with three-fold technical redundancy.

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