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Fungus metagenome

ABSTRACT: Metatranscriptome of Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB2 metatranscriptome

PROVIDER: PRJNA404113 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR6216145_1.fastq.gz	Fastqsanger.gz
	SRR6216145_2.fastq.gz	Fastqsanger.gz

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Project description:Metatranscriptome of Oidiodendron maius strain Zn mycelium 45 days culture from Turin, Italy - OmVmFLMB1 metatranscriptome

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Gene expression changes in Oidiodendron maius- Vaccinium myrtillus mycorrhizal roots compared to Oidiodendron maius free-living mycelium

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Gene expression changes in Oidiodendron maius- Vaccinium myrtillus mycorrhizal roots compared to Oidiodendron maius free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Oidiodendron maius mycorrhizal roots compared to free-living mycelium . Mycorrhizal roots and control mycelium were harvested after 45 days and used for RNA extraction. Reads of 2X100bp were generated and aligned to Oidiodendron maius transcripts (http://genome.jgi-psf.org/Oidma1) using CLC Genomics Workbench 6. mRNA profiles from Oidiodendron maius mycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples.

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