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Root metagenome

ABSTRACT: Metatranscriptome of Pinus sylvestris control root after 15 days - Controlpin15-1R metatranscriptome

PROVIDER: PRJNA404381 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6233259_1.fastq.gz	Fastqsanger.gz
	SRR6233259_2.fastq.gz	Fastqsanger.gz

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root metagenome

Project description:Metatranscriptome of Pinus sylvestris control root after 60 days - Controlpin60-1R metatranscriptome

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Comparative transcript profiling of interaction events in Pinus sylvestris root tissues following challenge (5dpi).

Project description:The response mechanisms, recognition and specificity of conifer trees during interaction with pathogenic, saprotrophic or symbiotic ectomycorrhizal fungus were investigated. The roots of Pinus sylvestris were challenged for five days with either Heterobasidion annosum (a pathogenic root rot fungus which attacks Norway spruce, Scots pine and broad leaf trees); Laccaria bicolor (an obligate ectomycorrhizal symbiont); or Trichoderma aureoviride (an obligate saprotroph). The gene expression data from cDNA micro-arrays consisting of 2176 Pinus taeda genes were analysed using 2-interconnected mixed linear model statistical approach. The result of the pairwise comparisons of the different treatments against un-inoculated control led to identification of genes specifically differentially expressed in the pathogenic, saprotrophic and symbiotic interactions. The results were compared with similar data obtained for two other interaction stages: 1 and 15 days post inoculation. The result of this comprehensive expression profiling will hopefully shed more light on the mechanistic basis for recognition and response of conifer trees to pathogenic and non-pathogenic fungi. Keywords: stress response

2006-07-31 | GSE5408 | GEO

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