Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces lydicus

ABSTRACT: Microbial diversity in Streptomyces lydicus inoculated soils Raw sequence reads

PROVIDER: PRJNA406877 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6031880_1.fastq.gz	Fastqsanger.gz
	SRR6031880_2.fastq.gz	Fastqsanger.gz
	SRR6031881_1.fastq.gz	Fastqsanger.gz
	SRR6031881_2.fastq.gz	Fastqsanger.gz
	SRR6031876_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Streptomyces lydicus

Project description:Streptomyces lydicus overview

| PRJNA222404 | ENA

Streptomyces lydicus A01

Project description:Streptomyces lydicus Genome sequencing

| PRJNA214259 | ENA

Streptomyces lydicus

Project description:Streptomyces lydicus Genome sequencing and assembly

| PRJNA341548 | ENA

Streptomyces lydicus strain:M01

Project description:Streptomyces lydicus strain:M01 Genome sequencing

| PRJNA774437 | ENA

Streptomyces lydicus strain:SW_ACT1

Project description:Streptomyces lydicus strain:SW_ACT1 Genome sequencing and assembly

| PRJNA495907 | ENA

Streptomyces lydicus strain:ATCC 25470

Project description:Streptomyces lydicus strain:ATCC 25470 Genome sequencing and assembly

| PRJNA495934 | ENA

Streptomyces lydicus strain:ATCC 31975

Project description:Streptomyces lydicus strain:ATCC 31975 Genome sequencing and assembly

| PRJNA496018 | ENA

Streptomyces lydicus strain:WYEC 108

Project description:Streptomyces lydicus strain:WYEC 108 Genome sequencing and assembly

| PRJNA451474 | ENA

Streptomyces lydicus strain:GS93 | isolate:23

Project description:Streptomyces lydicus strain:GS93 | isolate:23 Genome sequencing

| PRJNA363007 | ENA

Streptomyces sp. M7 LC-MS - Streptomyces sp. M7 has demonstrated ability to remove lindane from culture media and soils

Project description:Streptomyces sp. M7 has demonstrated ability to remove lindane from culture media and soils. In this study, we used MS-based label-free quantitative proteomic to understand lindane degradation and its metabolic context in Streptomyces sp. M7. We identified the proteins involved in the up-stream degradation pathway. Our results demonstrated that mineralization of lindane is feasible since proteins from an unusual down-stream degradation pathway were also identified. Degradative steps were supported by an active catabolism that supplied energy and reducing equivalents in the form of NADPH. This is the first study in which degradation steps of an organochlorine compound and metabolic context are elucidate in a biotechnological genus as Streptomyces. These results serve as basement to study other degradative actinobacteria and to improve the degradation processes of Streptomyces sp. M7.

2018-08-10 | PXD010607 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data