Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingobacteriaceae bacterium strain:SH-48

ABSTRACT: SH-48 Genome sequencing

PROVIDER: PRJNA407004 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	NVQB01.dat.gz	Other
	NVQB01.fasta.gz	Fasta.gz
	NVQB01.master.dat	Other
	NVQB01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Methanobrevibacter wolinii SH strain:SH

Project description:Methanobrevibacter wolinii SH strain:SH Genome sequencing and assembly

| PRJNA223477 | ENA

Lachnospiraceae bacterium strain:PH5-48

Project description:Lachnospiraceae bacterium strain:PH5-48 Genome sequencing

| PRJNA834207 | ENA

Bacillus pumilus strain:SH-9 | isolate:SH-9

Project description:Bacillus pumilus strain:SH-9 | isolate:SH-9 Genome sequencing

| PRJNA1056679 | ENA

SNP array of human neuroblastoma cell lines SH-SY5Y, SH-EP and SK-N-SH

Project description:TERT promoter muatations occur frequently in tumors of various origin. We here accessed the frequency of TERT pomoter mutations in 131 human primary neuroblastomas and 20 human neuroblastoma cell lines. No TERT promoter mutations were found in the 131 primary neuroblastomas. However, in the three cell lines SH-SY5Y, SH-EP and SK-N-SH a TERT promoter mutation was detected. Sanger sequencing indicated a homozygous mutation. To confirm loss of heterozygosity (LOH) we performed Affymetrix CytoScanHD SNP arrays. Indeed LOH could be confirmed. SNP arry experiments were performed according to the standard protocol for Affymetrix CytoScanHD arrays (Affymetrix, Santa Clara). Briefly, a 250 ng sample of genomic DNA was digested with NspI, ligated to adaptors, amplified by PCR, fragmented and biotin-labeled. The labeled samples were hybridized to Affymetrix CytoscanHD arrays, followed by washing, staining and scanning in the Affymetrix GeneChip Scanner 3000. Analysis was performed using the Affymetrix Chromosome Analysis Suite v2.1.

2015-03-03 | E-GEOD-66422 | biostudies-arrayexpress

SNP array of human neuroblastoma cell lines SH-SY5Y, SH-EP and SK-N-SH

2015-03-03 | GSE66422 | GEO

Bradyrhizobium japonicum strain:USDA 48 | isolate:USDA 48

Project description:Bradyrhizobium japonicum USDA 48 genome sequencing

| PRJNA834245 | ENA

Escherichia coli strain:48

Project description:Escherichia coli strain:48 Genome sequencing

| PRJNA255298 | ENA

Control ChIP-seq from SK-N-SH (ENCSR670GWL)

Project description:SK-N-SH immortalized cell line (treated with 6 uM all-trans-retinoic acid for 48 hours) stably expressing C-terminal eGFP-ZSCAN18 fusion protein. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

2021-06-15 | GSE177730 | GEO

Control ChIP-seq from SK-N-SH (ENCSR684GHA)

Project description:SK-N-SH immortalized cell line (treated with 6 uM all-trans-retinoic acid for 48 hours) stably expressing C-terminal eGFP-TOX2 fusion protein. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

2021-05-23 | GSE175052 | GEO

Control ChIP-seq from SK-N-SH (ENCSR566WAB)

Project description:SK-N-SH immortalized cell line (treated with 6 uM all-trans-retinoic acid for 48 hours) stably expressing C-terminal eGFP-ARNTL fusion protein. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

2021-05-23 | GSE174910 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data