Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Calotes versicolor isolate:BHU-M1

ABSTRACT: Calotes versicolor isolate:BHU-M1 Genome sequencing and assembly

PROVIDER: PRJNA408142 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR6055821_1.fastq.gz	Fastqsanger.gz
	SRR6055821_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Calotes versicolor

Project description:Calotes versicolor overview

| PRJNA503277 | ENA

Calotes versicolor

Project description:SbfI RAD-tag Sequencing of Calotes versicolor

| PRJNA408283 | ENA

Calotes emma

Project description:Calotes emma overview

| PRJNA774400 | ENA

Gene expression analysis of two strains of Trametes versicolor

Project description:Illumina HiSeq technology was used to generate mRNA profiles from two strains of Trametes versicolor. Mycelium of Trametes versicolor BRFM1218 and Trametes versicolor 1956-1252 were harvested after 2 and 4 weeks of incubation on 4% malt agar medium and used for total RNA extraction. Paired-end reads of 100 bp were generated and aligned to Trametes versicolor (https://mycocosm.jgi.doe.gov/Trave1/Trave1.home.html) reference transcripts using CLC Genomics Workbench 7.5.1.

2021-01-15 | GSE154077 | GEO

Thermoplasmatales archaeon M1 isolate:M1

Project description:Thermoplasmatales archaeon M1 isolate:M1 Genome sequencing

| PRJNA1012657 | ENA

Transcriptomic profile of lignocellulose degradation from Trametes versicolor on poplar wood

Project description:The Trametes versicolor genome is predicted to encode many enzymes that can effectively degrade lignin, making it a has potentially useful application intool for biopulping and biobleaching. Poplar is an important and widely cultivated species of tree species, which isand extensively applied used in the pulping industry. However, the wood degradation mechanism of T. versicolor from transcriptomic level is not clear. To reveal identify the enzymes that contributeing to lignocellulose degraredauction and its degradation mechanisms, we evaluated transcriptomic how study theof T. versicolor transcriptome was changes during evaluated growthing on the poplar wood relative to growth on glucose medium. 853 genes were differentially expressed;, 360 genes were up-regulated on poplar wood, and 493 genes were down-regulated on poplar wood. Notably, most genes relative involved into lignin degradation were up-regulated, including eight lignin peroxidase (LiP) genes, and two manganese peroxidase (MnP) genes etc. Genes encoding cellulose and hemicelluloses degrading-enzymesation were mostly down-regulated, including six endo-Î²-1, 4-glucanase genes, three cellobiohydrolase I genes, and one cellobiohydrolase II gene, etc. MeanwhileAdditionally, expression of more significant expansion of P450s in T. versicolor genome, along with differences in carbohydrate- and lignin-degrading enzymes, could bewere correlated withto poplar wood degradation. Our results revealed transcriptomic characterizeation transcriptomic changes related toof lignocellulose degradation. Therefore, our results cwould be benuseful for the development ofefit T. versicolor as a tool to improve the efficiency of lignin degradation, and provide a theoretical foundation for a new paper pulp manufacturing processe 1,T.versicolor groewn on PDA medium. 2, T. versicolor growing on the a glucose carbon medium of glucose. 3, T. versicolor growing on poplar medium

2016-08-06 | E-GEOD-81742 | biostudies-arrayexpress

Pestalotiopsis versicolor isolate:isolate from plant

Project description:Pestalotiopsis versicolor isolate:isolate from plant Genome sequencing

| PRJNA967465 | ENA

Calotes emma

Project description:The complete mitochondrial genome of Calotes emma

| PRJNA773849 | ENA

Callitettix versicolor isolate:DCBMC1

Project description:Callitettix versicolor isolate:DCBMC1 Genome sequencing and assembly

| PRJNA772103 | ENA

Erica versicolor isolate:herbarium POZ

Project description:Erica versicolor isolate:herbarium POZ Genome sequencing