Project description:Prostate of SD rats was injected with 0.1 ml 1% carrageenan to induce chronic nonbacterial prostatitis, and the control rats injected with sterile saline. Then, the cecal contents were collected for 16S rDNA sequencing.
Project description:The Equatorial Indian Ocean (EIO) is a complex system strongly influenced by Indian Monsoon. During a RAMA (Research Moored Array for African-Asian-Australian Monsoon Analysis and Prediction) mooring maintenance expedition during the Southwest monsoon (August-September 2016) onboard ORV Sagar Kanya, seawater samples from the surface, deep chlorophyll maxima (DCM) and 200m were collected for bacterioplankton community structure. Herein we document our amplicon data of the bacterial community at 4 stations (4.01°S, 1.60°S, 0.36°N and 1.78°N) along the 67°00' E transect. The samples were subjected to next-generation sequencing (NGS), followed by processing with Mothur v 1.48.0, and the taxonomic classification prepared with Silva 138.1nr reference database. Our data indicates Alphaproteobacteria (48 %) and Cyanobacteria (33 %) dominance in the surface and DCM samples.
Project description:Twilight zones in oceans represent the oceanic waters between 200 m to 1000 m in depth, wherein sunlight is diffused and intensity is <1% of surface value. The activities and diversity of marine micro-organisms in this unique zone are understudied, especially in the Indian Sector of the Southern Ocean. For a better understanding of the microbial environment and diversity in the twilight zone of the Indian sector of Southern Ocean, samples were collected from 200m depth in eddy-influenced waters of Subtropical Front (STF), Sub-Antarctic Front (SAF), Polar Front (PF), waters off Kerguelen (Kw), and Prydz Bay (Pb) waters. In this article, next-generation sequencing (NGS) based amplicon data of 16s rDNA bacterial samples are presented. Hypervariable V3-V4 regions were sequenced using Hiseq platform, and data was processed using Mothur v 1.48.0, and database Silva 138.1nr. Total of nine different phyla is reported from the Southern Ocean at 200m, whereas at order level Synechococcales was found in STF waters only and SAR 11_ Clades were present in all stations.