Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Chaenocephalus aceratus

ABSTRACT: Chaenocephalus aceratus Genetic Linkage Map

PROVIDER: PRJNA408286 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6058280.fastq.gz	Fastqsanger.gz
	SRR6058290.fastq.gz	Fastqsanger.gz
	SRR6058300.fastq.gz	Fastqsanger.gz
	SRR6058310.fastq.gz	Fastqsanger.gz
	SRR6058320.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 85

Similar Datasets

Chaenocephalus aceratus

Project description:Chaenocephalus aceratus overview

| PRJNA89337 | ENA

Chaenocephalus aceratus

Project description:Chaenocephalus aceratus Genome sequencing

| PRJNA89117 | ENA

Chaenocephalus aceratus

Project description:Chaenocephalus aceratus Transcriptome or Gene expression

| PRJNA177856 | ENA

Chaenocephalus aceratus

Project description:Chaenocephalus aceratus Genome sequencing and assembly

| PRJNA420419 | ENA

Chaenocephalus aceratus

Project description:Mapping the sex locus of the blackfin icefish (Chaenocephalus aceratus)

| PRJNA1061167 | ENA

Chaenocephalus aceratus strain:Cac80_2013

Project description:Chaenocephalus aceratus strain:Cac80_2013 Raw sequence reads

| PRJNA310135 | ENA

A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus.

Project description:The blackfin Icefish (Chaenocephalus aceratus) belongs to the family Channichthyidae and the suborder Notothenioidei which lives in the Antarctic. We corrected the mis-scaffolds in the previous linkage map results by Hi-C analysis to obtain improved results for chromosome-level genome assembly. The final assembly analysis resulted in a total of 3,135 scaffolds, a genome size of 1,065.72 Mb, and an N50 of 33.46 Mb. 820.24 Mb, representing 88.88% of the total genome, is anchored to 24 chromosomes. The final gene set of 38,024 genes, including AFGPs, was annotated using RNA evidence, proteins, and ab-initio predictions. The complete percentage of BUSCO analysis is 92.7%. In this study, we aim to contribute to the study of polar fishes by improving the genome sequences of the blackfin icefish with the AFGP genes belonging to the Notothenoidei.

| S-EPMC10522714 | biostudies-literature

Notothenia coriiceps

Project description:Notothenia coriiceps Genetic Linkage Map

| PRJNA261971 | ENA

Platygyra daedalea

Project description:Platygyra daedalea genetic linkage map

| PRJNA397297 | ENA

Avena barbata

Project description:Genetic Linkage Map of Avena barbata

| PRJNA517323 | ENA