Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Aspergillus niger strain:F9

ABSTRACT: Aspergillus niger F9 Gene Expression Profiling - F9_3

PROVIDER: PRJNA408387 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6232699.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Aspergillus niger strain:F9

Project description:Aspergillus niger F9 Gene Expression Profiling - F9_1

| PRJNA408385 | ENA

Aspergillus niger strain:F9

Project description:Aspergillus niger F9 Gene Expression Profiling - F9_2

| PRJNA408386 | ENA

Aspergillus niger mutants: induction by various carbon sources

Project description:This SuperSeries is composed of the following subset Series: GSE37758: Aspergillus niger : Control (fructose) vs. steam-exploded sugarcane induction (SEB) GSE37760: Aspergillus niger : Control (fructose) vs. xylose + arabinose (XA) Refer to individual Series

2012-05-06 | E-GEOD-37795 | biostudies-arrayexpress

A tri-species Aspergillus array (niger arrays)

Project description:The full genome sequencing of the ﬁlamentous fungi Aspergillus nidulans, Aspergillus niger and Aspergillus oryzae has opened the possibilities for studying the cellular physiology of these fungi on a systemic level. As a tool to explore this, we are presenting an Aﬀymetrix GeneChip developed for transcriptome analysis of any of the three above-mentioned aspergilli. Transcriptome analysis of triplicate batch cultivations of all three aspergilli on glucose-and xylose media has been performed, and used to validate the performance of the micro array. By doing gene comparisons of all three species, and cross-analysing this with the expression data, 23 genes, including the xylose transcriptional activator XlnR, have been identiﬁed to be a conserved response across the Aspergillus sp. Promoter analysis of the upregulated genes in all three species suggest the XlnR-binding site to be 5’-GGNTAAA-3’. We are thus presenting a validated tool for transcription analysis of three Aspergillus species and a methodology for comparative transcriptomics. Keywords: Physiological response

2008-02-15 | GSE9276 | GEO

The galactose regulator GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger.

Project description:Galactose catabolism in Aspergillus nidulans is regulated by at least two regulators, GalR and GalX. In Aspergillus niger only GalX is present, and its role in D-galactose catabolism in this fungus was investigated. Phenotypic and gene expression analysis of a wild type and a galX disruptant revealed that GalX does not substitute for the absence of GalR in A. niger, it regulates the D-galactose oxido-reductive pathway, but not the Leloir pathway. Four genes, including the recently characterized ladB (galactitol dehydrogenase) were found to have differencial expressions that are highly relevant to GalX , indicating a novel oxido-reductive pathway in A.niger .

2012-09-20 | GSE40219 | GEO

Transcriptome study on Aspergillus niger during citrate fermentation.

Project description:We report the genes regulated during citrate fermentation. Examination of 5 different time points during fermentation in Aspergillus niger H915-1.

2016-06-30 | E-GEOD-74544 | biostudies-arrayexpress

Regulation of inulin and sucrose utilization by Aspergillus niger AmyR and InuR

Project description:The aim of this study was to investigate the regulatory role of Aspergillus niger AmyR and InuR during growth on inulin and sucrose

2023-05-03 | GSE204768 | GEO

Aspergillus niger strain:F6

Project description:Aspergillus niger F6 Gene Expression Profiling - F6_2

| PRJNA408380 | ENA

Aspergillus niger strain:F6

Project description:Aspergillus niger F6 Gene Expression Profiling - F6_3

| PRJNA408381 | ENA

Aspergillus niger strain:C7

Project description:Aspergillus niger C7 Gene Expression Profiling - C7_3

| PRJNA408372 | ENA