Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Phytophthora rubi

ABSTRACT: Phytophthora rubi and Phytophthora fragariae Genotyping-by-sequencing

PROVIDER: PRJNA413437 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6144860_1.fastq.gz	Fastqsanger.gz
	SRR6144860_2.fastq.gz	Fastqsanger.gz
	SRR6144870_1.fastq.gz	Fastqsanger.gz
	SRR6144870_2.fastq.gz	Fastqsanger.gz
	SRR6144880_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 362

Similar Datasets

Phytophthora rubi and Phytophthora fragariae

Project description:Phytophthora rubi and Phytophthora fragariae Genome sequencing and assembly

| PRJNA375089 | ENA

Phytophthora rubi

Project description:Phytophthora rubi overview

| PRJNA401193 | ENA

Phytophthora rubi

Project description:Phytophthora rubi GBS methods reads

| PRJNA338312 | ENA

Phytophthora rubi strain:109.892

Project description:Phytophthora rubi strain:109.892 Genome sequencing and assembly

| PRJNA401491 | ENA

Phytophthora rubi strain:CBS 109.892

Project description:Phytophthora rubi strain:CBS 109.892 Genome sequencing and assembly

| PRJNA244739 | ENA

Phytophthora fragariae

Project description:Phytophthora fragariae overview

| PRJNA245455 | ENA

Functional genomics identifies a small secreted protein that plays a role during the biotrophic to necrotrophic shift in the root rot pathogen Phytophthora medicaginis

Project description:Introduction: Hemibiotrophic Phytophthora are a group of agriculturally and ecologically important pathogenic oomycetes causing severe decline in plant growth and fitness. The lifestyle of these pathogens consists of an initial biotrophic phase followed by a switch to a necrotrophic phase in the latter stages of infection. Between these two phases is the biotrophic to necrotrophic switch (BNS) phase, the timing and controls of which are not well understood particularly in Phytophthora spp. where host resistance has a purely quantitative genetic basis. Methods: To investigate this we sequenced and annotated the genome of Phytophthora medicaginis, causal agent of root rot and substantial yield losses to Fabaceae hosts. We analysed the transcriptome of P. medicaginis across three phases of colonisation of a susceptible chickpea host (Cicer arietinum) and performed co-regulatory analysis to identify putative small secreted protein (SSP) effectors that influence timing of the BNS in a quantitative pathosystem. Results: The genome of P. medicaginis is ~78 Mb, comparable to P. fragariae and P. rubi which also cause root rot. Despite this, it encodes the second smallest number of RxLR (arginine-any amino acid-leucine-arginine) containing proteins of currently sequenced Phytophthora species. Only quantitative resistance is known in chickpea to P. medicaginis, however, we found that many RxLR, Crinkler (CRN), and Nep1-like protein (NLP) proteins and carbohydrate active enzymes (CAZymes) were regulated during infection. Characterisation of one of these, Phytmed_10271, which encodes an RxLR effector demonstrates that it plays a role in the timing of the BNS phase and root cell death. Discussion: These findings provide an important framework and resource for understanding the role of pathogenicity factors in purely quantitative Phytophthora pathosystems and their implications to the timing of the BNS phase.

2024-08-05 | GSE183604 | GEO

Genetic Variation of Phytophthora rubi Isolates from Red Raspberry

Project description:Genome Resources and Whole Genome Resequencing of Phytophthora rubi Isolates from Red Raspberry

2023-06-05 | PRJEB62133 | EVA

Phytophthora fragariae strain:309.62

Project description:Phytophthora fragariae strain:309.62 Genome sequencing and assembly

| PRJNA401490 | ENA

Agrobacterium rubi

Project description:Agrobacterium rubi overview

| PRJNA172810 | ENA