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Analysis of chromatin accessibility in decidualizing human endometrial stromal cells

ABSTRACT: Analysis of chromatin accessibility in decidualizing human endometrial stromal cells

PROVIDER: PRJNA413636 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6148320_1.fastq.gz	Fastqsanger.gz
	SRR6148320_2.fastq.gz	Fastqsanger.gz
	SRR6148321_1.fastq.gz	Fastqsanger.gz
	SRR6148321_2.fastq.gz	Fastqsanger.gz
	SRR6148322_1.fastq.gz	Fastqsanger.gz

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Analysis of chromatin accessibility in decidualizing human endometrial stromal cells

Project description:Spontaneous decidualization of the endometrium in response to progesterone signaling is confined to menstruating species, including humans and other higher primates. During this process, endometrial stromal cells (EnSCs) differentiate into specialized decidual cells that control embryo implantation. We subjected undifferentiated and decidualizing human EnSCs to Assay for Transposase Accessible Chromatin with sequencing (ATAC-seq) to map the underlying chromatin changes. A total of 185,084 open DNA loci were mapped accurately in EnSCs. Altered chromatin accessibility upon decidualization was strongly associated with differential gene expression. Analysis of 1,533 opening as well as closing chromatin regions revealed overrepresentation of DNA binding motifs for known decidual transcription factors (TFs) and identified putative new regulators. ATAC-seq footprint analysis provided evidence of TF binding at specific motifs. One of the largest footprints involved the most enriched motif, basic leucine zipper (bZIP), as part of a triple motif that also comprised the estrogen receptor- and Pax domain-binding sites. Without exception, triple motifs were located within Alu elements, suggesting a role for this primate-specific transposable element (TE) in the evolution of decidual genes. Although other TEs were generally underrepresented in open chromatin of undifferentiated EnSCs, several classes contributed to the regulatory DNA landscape that underpins decidual gene expression.

2018-02-28 | GSE104720 | GEO

Epigenomic exploration of decidualizing human endometrial stromal cell dynamics

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Transcriptomic exploration of decidualizing human endometrial stromal cell dynamics

Project description:Transcriptomic exploration of decidualizing human endometrial stromal cell dynamics

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Epigenomic exploration of decidualizing human endometrial stromal cell dynamics

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Analysis of chromatin accessibility in decidualizing human endometrial stromal cells.

Project description:Spontaneous decidualization of the endometrium in response to progesterone signaling is confined to menstruating species, including humans and other higher primates. During this process, endometrial stromal cells (EnSCs) differentiate into specialized decidual cells that control embryo implantation. We subjected undifferentiated and decidualizing human EnSCs to an assay for transposase accessible chromatin with sequencing (ATAC-seq) to map the underlying chromatin changes. A total of 185,084 open DNA loci were mapped accurately in EnSCs. Altered chromatin accessibility upon decidualization was strongly associated with differential gene expression. Analysis of 1533 opening and closing chromatin regions revealed over-representation of DNA binding motifs for known decidual transcription factors (TFs) and identified putative new regulators. ATAC-seq footprint analysis provided evidence of TF binding at specific motifs. One of the largest footprints involved the most enriched motif-basic leucine zipper-as part of a triple motif that also comprised the estrogen receptor and Pax domain binding sites. Without exception, triple motifs were located within Alu elements, which suggests a role for this primate-specific transposable element (TE) in the evolution of decidual genes. Although other TEs were generally under-represented in open chromatin of undifferentiated EnSCs, several classes contributed to the regulatory DNA landscape that underpins decidual gene expression.-Vrljicak, P., Lucas, E. S., Lansdowne, L., Lucciola, R., Muter, J., Dyer, N. P., Brosens, J. J., Ott, S. Analysis of chromatin accessibility in decidualizing human endometrial stromal cells.

| S-EPMC6040682 | biostudies-literature

Progesterone receptor transcriptome and cistrome in decidualized human endometrial stromal cells

Project description:We report the whole genome binding profile of PGR and FOSL2 ChIP-seq in decidualizing human endometrial stromal cells

2015-06-05 | E-GEOD-69539 | biostudies-arrayexpress

SRC-2/NCOA genomic binding in decidualizing human endometrial stromal cells

Project description:SRC-2/NCOA genomic binding in decidualizing human endometrial stromal cells

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Knockdown of mineralocorticoid receptor or glucocorticoid receptor on human endometrial stromal cells and decidualization

Project description:To clarify mineralcorticoid receptor and glucocorticoid receptor-dependent gene networks in decidualizing human endometrial stromal cells.

2012-11-28 | GSE42538 | GEO

Endometrial gland impacts on stromal cell decidualization

Project description:Uterine glands and, by inference, their secretions impact uterine receptivity, blastocyst implantation, stromal cell decidualization, and placental development. Changes in gland function across the menstrual cycle are impacted by steroid hormones, estrogen and progesterone, as well as stroma-derived factors. Using an endometrial epithelial organoid (EEO) system, transcriptome and proteome analyses identified distinct responses of the EEO to steroid hormones and prostaglandin E2 (PGE2). Notably, steroid hormones and PGE2 modulated the basolateral secretion of EEO proteins, where cystatin C (CST3) was significantly increased by progesterone and PGE2. CST3 treatment of decidualizing stromal cells significantly decreased the decidualization markers PRL and IGFBP1. The attenuation of stromal cell decidualization via CST3 suggests a role for uterine gland-derived proteins in controlling the extent of decidualization. These findings provide evidence that uterine gland-derived factors directly impact stromal cell decidualization, which has strong implications for better understanding pregnancy establishment and female fertility in humans.

2023-10-11 | PXD034357 | Pride

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