Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Enterobacter soli strain:LF7a

ABSTRACT: Enterobacter soli strain:LF7a Genome sequencing

PROVIDER: PRJNA41509 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR402814.fastq.gz	Fastqsanger.gz
	SRR402815.fastq.gz	Fastqsanger.gz
	GCA_000224675.1_sequence_report.txt	Txt

Items per page:

1 - 3 of 3

Similar Datasets

iac gene expression in the indole-3-acetic acid-degrading soil bacterium Enterobacter soli LF7

Project description:We show for soil bacterium Enterobacter soli LF7 (synonym Enterobacter asburiae LF7a) that possession of a iac (indole 3-acetic acid catabolic) gene cluster is causatively linked to the ability to utilize the plant hormone indole 3-acetic acid (IAA) as a carbon and energy source. Genome-wide transcriptional profiling by mRNA sequencing revealed that these iac genes chromosomally arranged as iacHABICDEFG and coding for the transformation of IAA to catechol, were the most highly induced (>29-fold) among the relatively few (<1%) differentially expressed genes in response to IAA. Also highly induced and immediately downstream of the iac cluster were genes for a Major Facilitator Superfamily protein (mfs) and enzymes of the β-ketoadipate pathway (pcaIJD-catBCA), which channels catechol into central metabolism. This entire iacHABICDEFG-mfs-pcaIJD-catBCA gene set was constitutively expressed in a iacR deletion mutant, confirming the role of iacR, annotated as coding for a MarR-type regulator and located upstream of iacH, as a repressor of iac gene expression. The research described here was funded from grants #2010-03544 and #2013-02075 awarded to JHJL by the United States Department of Agriculture (USDA) National Institute of Food and Agriculture (NIFA) Agriculture and Food Research Initiative (AFRI)

2018-05-05 | GSE114050 | GEO

Enterobacter soli strain:A23

Project description:Enterobacter soli strain:A23 Genome sequencing and assembly

| PRJNA716197 | ENA

Enterobacter soli

Project description:Enterobacter soli overview

| PRJNA464417 | ENA

Enterobacter soli ATCC BAA-2102

Project description:Enterobacter soli ATCC BAA-2102 Genome sequencing and assembly

| PRJNA210913 | ENA

Echinicola soli strain:LN3S3

Project description:Echinicola soli strain:LN3S3 Genome sequencing