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Echium plantagineum

ABSTRACT: Echium plantagineum Transcriptome or Gene expression

PROVIDER: PRJNA415520 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7076850_1.fastq.gz	Fastqsanger.gz
	SRR7076850_2.fastq.gz	Fastqsanger.gz
	SRR7076851_1.fastq.gz	Fastqsanger.gz
	SRR7076851_2.fastq.gz	Fastqsanger.gz
	SRR7076846_1.fastq.gz	Fastqsanger.gz

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Echium plantagineum

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Echium plantagineum isolate:BPTPS251

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Project description:Craterostigma plantagineum overview

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The complete plastome of <i>Echium plantagineum</i> L. (Boraginaceae), the first chloroplast genome belonging to the <i>Echium</i> genus.

Project description:Besides being a common weed, the presence of Echium plantagineum L. in food and feed commodities can represent a safety hazard due to their content in pyrrolizidine alkaloids. In this study, the complete chloroplast of E. plantagineum isolate BPTPS251 is described, being the first available plastome from an isolate belonging to the Echium genus. The chloroplast genome is 149,776 bp in length with 37.5% GC content, displaying a quadripartite structure that contains a pair of inverted repeats regions (25,754 bp each), separated by a large single-copy (80,978 bp) and a small single-copy (17,290 bp) regions. A total of 131 genes were predicted, including 37 tRNA genes, 8 rRNA genes, and 86 protein-coding genes. The phylogenetic analysis confirmed the placement of E. plantagineum under the Boraginaceae family, belonging to the Boraginales order. This study will contribute to conservation, phylogenetic, and evolutionary studies, as well as DNA barcoding applications for food and feed safety purposes.

| S-EPMC9245987 | biostudies-literature

A multi-omics angle sheds light on the molecular mechanisms underlying desiccation tolerance in Craterostigma plantagineum

Project description:The resurrection plant Craterostigma plantagineum possesses an extraordinary capacity to survive long-term desiccation. To enhance our understanding of this phenomenon, complementary transcriptome, soluble proteome and primary metabolome analyses were carried out on plant leaves collected at different physiological stages during a dehydration and rehydration cycle. Dynamic changes in transcript, protein and metabolite levels revealed a unique signature characterizing each stage

2021-04-27 | PXD020923 | Pride

The cell wall proteome of Craterostigma plantagineum cell cultures habituated to dichlobenil and isoxaben

Project description:The remarkable desiccation tolerance of the vegetative tissues in the resurrection species Craterostigma plantagineum (Hochst.) is favored by its unique cell wall folding mechanism that allows the ordered and reversible shrinking of the cells without damaging neither the cell wall nor the underlying plasma membrane. The ability to withstand extreme drought is also maintained in abscisic acid pre-treated calli, which can be cultured both on solid and in liquid culture media. Cell wall research has greatly advanced thanks to the use of inhibitors affecting the biosynthesis of e.g. cellulose, since they allowed the identification of the compensatory mechanisms underlying habituation. Considering the innate cell wall plasticity of C. plantagineum, the goal of this investigation was to understand whether habituation to the cellulose biosynthesis inhibitors dichlobenil and isoxaben entailed or not identical mechanisms as known for non-resurrection species and to decipher the cell wall proteome of habituated cells. The results showed that exposure of C. plantagineum calli/cells triggered abnormal phenotypes as reported in non-resurrection species. Additionally, the data demonstrated that it was possible to habituate Craterostigma cells to dichlobenil and isoxaben and that gene expression and proteomics did not follow the same trend. Shotgun and gel-based proteomics revealed a common set of proteins induced upon habituation, but also identified candidates solely induced by habituation to one of the two inhibitors. Finally, it is hypothesized that alterations in auxin levels are responsible for the increased abundance of cell wall-related proteins upon habituation.

2022-02-17 | PXD026723 | Pride

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