Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Mate pair whole genome sequencing in leukemia

PROVIDER: PRJNA415732 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6216310.fastq.gz	Fastqsanger.gz
	SRR6216310_1.fastq.gz	Fastqsanger.gz
	SRR6216310_2.fastq.gz	Fastqsanger.gz
	SRR6216311.fastq.gz	Fastqsanger.gz
	SRR6216311_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Whole-genome sequencing and mate pair sequencing of D. melanogaster carrying second (CyO) and third (TM3) balancer chromosomes

Project description:We used a Drosophila melanogaster line (a "double balancer") carrying balancer chromosomes for both the second (CyO) and third (TM3) chromosomes. We crossed the double balancer to an isogenic wild-type "virginizer" line to obtain trans-heterozygous adults from the F1 generation. Whole-genome sequencing and mate pair sequencing were used to identify Single Nucleotide Variants (SNVs) and Structural Variants (SVs) on both chromosomes.

2019-05-02 | E-MTAB-7510 | biostudies-arrayexpress

Draft genome sequencing of Lactuca. sativa cv. Tizian

Project description:The draft genome of L. sativa (lettuce) cv. Tizian was sequenced in two Illumina sequencing runs, mate pair and shotgun. This entry contains the RAW sequencing data.

2018-02-09 | E-MTAB-6347 | biostudies-arrayexpress

WGS_MATE_PAIR_DATA_SET_mars_prostate_2012_12_03 - samples

Project description:ICGC prostate cancer whole genome mate-pair sequencing

| EGAD00001000303 | EGA

WGS_MATE_PAIR_DATA_SET_ICGC_PedBrainTumor_Medulloblastoma_Discovery_Cohort - samples

Project description:release_2: ICGC PedBrain: whole genome mate-pair sequencing

| EGAD00001000327 | EGA

Homo sapiens

Project description:Mate-pair Seq

| PRJNA209488 | ENA

Extra-long mate-pair sequenicng of genome of BN Rats

Project description:Extra-long mate-pair sequenicng of genome of BN Rats to improve scaffolding of reference rat genome

2012-05-15 | E-MTAB-1082 | biostudies-arrayexpress

Ogye body map RRBS data

Project description:The Yeonsan Ogye (Ogye) is the rare black chicken breed domesticated in Korean peninsula, which has been noted for entire black color upon its appearances including feather, skin, comb, eyes, shank, claws and internal organs. In this study, whole genome, transcriptome and epigenome sequencings of Ogye were performed using high-throughput NGS sequencing platforms. We have produced Illumina short-reads (Paired-End, Mate-Pair and FOSMID) and PacBio long-reads for whole genome sequencing (WGS), 1.4 billion reads for RNA-seq, and 123 million reads for RRBS (reduced representation bisulfite sequencing) data. Using WGS data, Ogye genome has been assembled, and coding/non-coding transcriptome maps were constructed on Ogye genome given largescale sequencing data. We have predicted 17,472 (3,550 newly annotated and 13,922 known) protein-coding transcripts, and 9,443 (6,689 novel and 2,754 known) long non-coding RNAs (lncRNAs).

2018-06-21 | GSE104355 | GEO

Ogye body map RNA-seq data

2018-06-21 | GSE104351 | GEO

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

ena-DATASET-DCG-LU-16-05-2016-09:33:32:167-83 - samples

Project description:Mate pair whole genome sequencing data from 15 pediatric BCP ALL cases. Reference genome: hg19. Alignment: BWA 0.7.9a.

| EGAD00001002113 | EGA