Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sphingopyxis lindanitolerans strain:WS5A3p

ABSTRACT: Sphingopyxis lindanitolerans strain:WS5A3p Genome sequencing and assembly

PROVIDER: PRJNA418918 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Differential RNA-Seq (dRNA-seq) data from Sphingopyxis granuli strain TFA grown in two different carbon sources and RNA-seq from Hfq-coIP experiment.

Project description:We performed differential RNA-sequencing (dRNA-seq) experiments in both minimal medium (MM) plus β-hydroxybutyrate (β-HB) and MM plus tetralin (THN) of Sphingopyxis granuli strain TFA. The objective was mapping the Transcription Start Site (TSS) of each gene in the genome in both conditions, detecting non-coding RNAs (ncRNAs) and comparing the gene expression profile in a preferential carbon source (β-HB) versus tetralin (an aromatic pollutant). The dRNA-seq technique consists of using a termination exonuclease (TEX) to allow the discrimination of primary and processed transcripts. Furthermore, to detect Hfq-bound RNAs we co-immunoprecipitated RNA from the wild type strain (negative control) and a TFA strain with an Hfq-3xFlag tagged version (MPO501 strain) using an anti-3xFlag antibody and performed RNA-sequencing from the precipitated RNA.

2018-08-14 | GSE111181 | GEO

Sphingopyxis solisilvae strain:R366

Project description:Sphingopyxis solisilvae strain:R366 Genome sequencing and assembly

| PRJNA673652 | ENA

Sphingopyxis jiangsuensis strain:XHP0097

Project description:Sphingopyxis jiangsuensis strain:XHP0097 Genome sequencing and assembly

| PRJNA756158 | ENA

Sphingopyxis macrogoltabida strain:203N

Project description:Sphingopyxis macrogoltabida strain:203N Genome sequencing and assembly

| PRJNA303954 | ENA

Sphingopyxis soli strain:BL03

Project description:Sphingopyxis soli strain:BL03 Genome sequencing and assembly

| PRJNA707349 | ENA

Sphingopyxis lutea strain:DHUNG17

Project description:Sphingopyxis lutea strain:DHUNG17 Genome sequencing and assembly

| PRJNA689945 | ENA

Flavobacterium lindanitolerans

Project description:Flavobacterium lindanitolerans overview

| PRJNA89705 | ENA

Flavobacterium lindanitolerans strain:IP-10

Project description:Flavobacterium lindanitolerans IP-10 genome sequencing

| PRJNA369973 | ENA

Genomic Analysis of γ-Hexachlorocyclohexane-Degrading <i>Sphingopyxis lindanitolerans</i> WS5A3p Strain in the Context of the Pangenome of <i>Sphingopyxis</i>.

Project description:Sphingopyxis inhabit diverse environmental niches, including marine, freshwater, oceans, soil and anthropogenic sites. The genus includes 20 phylogenetically distinct, valid species, but only a few with a sequenced genome. In this work, we analyzed the nearly complete genome of the newly described species, Sphingopyxislindanitolerans, and compared it to the other available Sphingopyxis genomes. The genome included 4.3 Mbp in total and consists of a circular chromosome, and two putative plasmids. Among the identified set of lin genes responsible for γ-hexachlorocyclohexane pesticide degradation, we discovered a gene coding for a new isoform of the LinA protein. The significant potential of this species in the remediation of contaminated soil is also correlated with the fact that its genome encodes a higher number of enzymes potentially involved in aromatic compound degradation than for most other Sphingopyxis strains. Additional analysis of 44 Sphingopyxis representatives provides insights into the pangenome of Sphingopyxis and revealed a core of 734 protein clusters and between four and 1667 unique proteins per genome.

| S-EPMC6771000 | biostudies-literature

Sphingopyxis macrogoltabida strain:203

Project description:Sphingopyxis macrogoltabida strain:203 Genome sequencing

| PRJNA260764 | ENA